Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_G04
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 107 7e-24
03_04_0027 + 16593133-16593573 104 5e-23
02_01_0563 + 4134954-4135388 102 2e-22
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 31 0.70
01_02_0037 + 10476208-10476876 29 2.2
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 28 6.6
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128 28 6.6
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 8.7
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 27 8.7
07_01_1169 - 11058752-11058895,11059727-11059822,11060200-110603... 27 8.7
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 8.7
>07_03_1250 - 25183375-25183815
Length = 146
Score = 107 bits (257), Expect = 7e-24
Identities = 52/124 (41%), Positives = 73/124 (58%)
Frame = -1
Query: 443 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 264
M TS +K RK RGHVS GNAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 263 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 84
FH +NK + P +N+++LW++V + + A A GK P++++ + LP++
Sbjct: 61 FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118
Query: 83 PVIV 72
P++V
Sbjct: 119 PIVV 122
>03_04_0027 + 16593133-16593573
Length = 146
Score = 104 bits (250), Expect = 5e-23
Identities = 54/125 (43%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = -1
Query: 443 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 264
M T KK RK RGHVS GNAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 263 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXLPK 87
FH N+ CP +N+++LW++V K A A GK PVI++ + P+
Sbjct: 61 FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117
Query: 86 QPVIV 72
+P++V
Sbjct: 118 RPIVV 122
>02_01_0563 + 4134954-4135388
Length = 144
Score = 102 bits (245), Expect = 2e-22
Identities = 53/125 (42%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = -1
Query: 443 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 264
M T KK RK RGHVS GNAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 263 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXLPK 87
FH N+ CP +N+++LW++V + A A GK PVI++ + P+
Sbjct: 61 FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115
Query: 86 QPVIV 72
+P++V
Sbjct: 116 RPIVV 120
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 441 HGSMFRQLLKKKDIGRPNSFKFPIVSRIKYVLAVVL 548
+G Q L K +IGRP +K P+V + VL +++
Sbjct: 426 NGQDIYQRLAKSEIGRPPHWKLPVVITVAVVLVIIV 461
>01_02_0037 + 10476208-10476876
Length = 222
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 10 HKHHPHPXIFFSADFEKNFAFTMTGCLGSLPLPSNL*YPALTILMTGTLPSGADA 174
H HH HP F F +A TM S P +P +T+ +T T GA A
Sbjct: 30 HHHHHHPAAMFHQSFP--YASTMATLSASAP------FPTITLDLTQTPAGGAGA 76
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 186 EAEVCICSRWQ-GPRHQYCQSWILQVARQRQTPQTTCHSK 70
E ++ +CSR G H YC ++Q + + TCHS+
Sbjct: 288 EEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSE 327
>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
Length = 1226
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 323 DGAHHQHYHDLLDAYGAFRYDHVRD*HDLSAS*SSFLRWP-WFNVPSTFEKERHR 484
D H H+H+++ + D D D ++ L+ P W+++P T +ER R
Sbjct: 56 DKEHDGHHHEVIRTWVKQVRDVAYDVEDCLQDYAARLKKPPWWSLPCTVHRERRR 110
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 317 FCDGAHHQHYHDLLDAYG 370
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = -3
Query: 153 GPRHQYCQSWILQVARQRQTPQTTCHS 73
GP H WI + +Q P+ HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284
>07_01_1169 -
11058752-11058895,11059727-11059822,11060200-11060308,
11061299-11061300,11062946-11062974,11063429-11063480
Length = 143
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 524 NTTHYREFK*IRPADVFLFQKLTEH*TMATSKKKTRK 414
N HYR + +V + Q+ EH A+S K+TRK
Sbjct: 11 NFGHYRN---VEAKEVLVVQRFAEHVAGASSSKRTRK 44
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 334 PPALPRPPGCLRCFPIRPCP 393
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,701,693
Number of Sequences: 37544
Number of extensions: 316695
Number of successful extensions: 826
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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