Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G04
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   124   5e-29
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    54   6e-08
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical...    28   5.9  
AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lecti...    28   5.9  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  124 bits (299), Expect = 5e-29
 Identities = 61/124 (49%), Positives = 78/124 (62%)
 Frame = -1

Query: 443 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 264
           MA + +KTRKLRGHVS                GNAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 263 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 84
           FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K           LP+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 83  PVIV 72
           P+IV
Sbjct: 118 PLIV 121


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 27/67 (40%), Positives = 40/67 (59%)
 Frame = -1

Query: 272 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXL 93
           MR FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K           L
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 92  PKQPVIV 72
           P+ P+IV
Sbjct: 58  PETPLIV 64


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 337 PALPRPPGCLRCFPIRPCP 393
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = -1

Query: 440 ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMD-----KYHPGYFGKL 276
           +T  KK+ K  GH                   N GG   H + M+     ++ P  F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186

Query: 275 GMRNFHFRK 249
           G   F+F+K
Sbjct: 187 GKSFFNFKK 195


>AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical
           protein R12E2.10 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 183 AEVCICSRWQGPRHQYCQSWILQVARQRQ 97
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical
           protein T21E3.1 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 183 AEVCICSRWQGPRHQYCQSWILQVARQRQ 97
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lectin
           protein 80 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = -1

Query: 278 LGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 126
           LG  NF+++ ++++      +  WT  + +T LK+  +    +P  N+  +
Sbjct: 105 LGWTNFNYQNSQDYVAESVTNAKWTAYNSETELKFVCSYYPLMPTTNLASS 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,155
Number of Sequences: 27780
Number of extensions: 269936
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)