Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G01
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    26   6.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   6.5  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 394 QRPQVVRHGQLHVRG*KHLRQGYRLHLHLPGQAXXVEK 281
           Q  Q+V HG++HV G K  R+ YR    LPG    V++
Sbjct: 113 QARQLVLHGKVHVNG-KPERRAYR--QLLPGDLVTVDQ 147


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/61 (31%), Positives = 23/61 (37%)
 Frame = -2

Query: 398 TSAASSGPTWATTRAWLKTFTARIPAPPSFTRSSXASRKGK*ICTTTPMPAESFKRNRCS 219
           TS+ SS  T  T      TFT       +FT S         I T+ P    SF  +  S
Sbjct: 421 TSSNSSYTTTLTASNTTVTFTGTGTGSATFTSSPPFYSNSSVIPTSAPSSVSSFTSSNSS 480

Query: 218 Y 216
           Y
Sbjct: 481 Y 481



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -2

Query: 398 TSAASSGPTWATTRAWLKTFTARIPAPPSFTRSSXASRKGK*ICTTTPMPAESFKRNRCS 219
           TS++SS  T  T      T+T       +FT S         I T+ P    SF  +  S
Sbjct: 313 TSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSS 372

Query: 218 Y 216
           Y
Sbjct: 373 Y 373


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 433 WQDKSAAVRGPVHQRPQVVRHGQLH 359
           W    + ++ PV QRP ++ H +LH
Sbjct: 17  WFVAKSQIKKPVDQRPVILTHCKLH 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,805
Number of Sequences: 5004
Number of extensions: 43282
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)