Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_G01
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0017 + 21546434-21546841                                         32   0.42 
08_02_1044 + 23913849-23915090                                         30   1.7  
05_01_0137 + 917533-917814,918080-918352                               29   3.9  
07_03_0015 - 12447947-12448393                                         29   5.1  
01_03_0311 + 14905995-14906393,14906982-14907009,14907893-149079...    29   5.1  

>05_05_0017 + 21546434-21546841
          Length = 135

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 437 PLAG*ECCRPGTCTSAASSGPTWATT--RAWLKTFTARIPAPPSFTRSSXAS 288
           PL+  E CRPG    A SS P  ATT         TA  P+P +  +SS A+
Sbjct: 60  PLSTPELCRPGEPVPAPSSSPAGATTTPAPAAPAATAPAPSPEADGKSSGAA 111


>08_02_1044 + 23913849-23915090
          Length = 413

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 413 RPGTCTSAASSGPTWATTRAWLKTFTARIPAPPSFTRSSXASRKGK 276
           R G       SG  W+   + ++TF+AR+PA  S  R + A   GK
Sbjct: 336 RAGRSVRLGQSG-RWSNVSSLMRTFSARLPAWGSARRGAEADSPGK 380


>05_01_0137 + 917533-917814,918080-918352
          Length = 184

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = -2

Query: 395 SAASSGPTWATTRAWLKTFTARIPAPPSFTRSSXASRKGK*ICTTTPMP 249
           +AAS+ PT  ++ A   T T   P PPSF R S   R     CT  P P
Sbjct: 48  AAASASPT-TSSPAPTTTTTTSPPPPPSFRRRSFCRR-----CTPPPPP 90


>07_03_0015 - 12447947-12448393
          Length = 148

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 588 EASPSLISPPRHRQCTQWWWR 650
           EA P    PPR   C +WWWR
Sbjct: 32  EARPRATLPPR---CRRWWWR 49


>01_03_0311 +
           14905995-14906393,14906982-14907009,14907893-14907930,
           14908741-14908878,14909180-14909356,14909497-14909550,
           14909713-14909813,14910445-14910739
          Length = 409

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/33 (54%), Positives = 18/33 (54%)
 Frame = -2

Query: 440 RPLAG*ECCRPGTCTSAASSGPTWATTRAWLKT 342
           RPLA     RP T   AA S P  ATTR WL T
Sbjct: 40  RPLAAVTRTRPVT---AARSRPVAATTRTWLAT 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,332,126
Number of Sequences: 37544
Number of extensions: 323512
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)