Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F21
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0069 + 8782535-8782920,8783016-8783281,8783588-8783869,878...    29   1.6  
07_03_1705 + 28848293-28848321,28848766-28848841,28848940-288490...    26   8.7  

>10_05_0069 +
           8782535-8782920,8783016-8783281,8783588-8783869,
           8784559-8784632,8787230-8787461,8788067-8788077
          Length = 416

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 143 DNNLGRSLKTCKVGLSIRTSEETVCLVRVFNVLDSV 250
           D  +GR+ K    G+S R S  +  +  VFN ++S+
Sbjct: 243 DTRVGRNTKALVAGVSERASRHSDAMASVFNAVNSI 278


>07_03_1705 +
           28848293-28848321,28848766-28848841,28848940-28849082,
           28849297-28849383,28849492-28849575,28850224-28850380,
           28850521-28850606,28850995-28851226,28851351-28851471,
           28851610-28851746,28852086-28852202,28852612-28852660,
           28852751-28852793,28852945-28853116,28853192-28853262,
           28853365-28853458,28853608-28853820,28853851-28853859,
           28853895-28853999,28854266-28854586,28854664-28854789
          Length = 823

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 20  HFLXYFTKLFFXXXXXXXXXXXXXVFDRLAIKSCIKSPIDNDNNLGRSLKTCK 178
           HF+ ++  +F              V D  A++S   +P    NNL RSL   K
Sbjct: 567 HFISHYGSIFIQNITQLAKELNLPVDDLSAVESIPAAPKPTQNNLPRSLGGAK 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,021,653
Number of Sequences: 37544
Number of extensions: 98015
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)