Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_F19
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 88 2e-18
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 46 1e-05
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 46 1e-05
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318... 31 0.49
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 29 2.0
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 4.6
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 6.0
09_03_0207 - 13486694-13487047 27 8.0
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 27 8.0
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 88.2 bits (209), Expect = 2e-18
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = -1
Query: 262 GCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRK 131
GC+ ITTVFSH+Q VVVC GC T+LCQPTGG+ARLTEGCSFRRK
Sbjct: 41 GCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRK 84
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = -3
Query: 365 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVK 270
IDLL+P E+ KHK KRLV PNS+FMDVK
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVK 38
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = -3
Query: 365 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVK 270
IDLL+P E+ KHK KRLV PNS+FMDVK
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVK 38
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = -3
Query: 365 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVK 270
IDLL+P E+ KHK KRLV PNS+FMDVK
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVK 38
>08_02_1186 +
25027498-25029854,25029953-25030564,25031742-25031847,
25032669-25033199
Length = 1201
Score = 30.7 bits (66), Expect = 0.49
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 356 LHPSPASERRKHKLKRLVPHPNSYFMDVKXPW-LLQDYNSF*SRTESGGLRWM 201
LHP + E R ++LKR+V MD K P+ LL+D N F + RW+
Sbjct: 257 LHPEVSFECRSYELKRVV---EMLKMDPKAPFLLLEDDNKFVYSNSNRPYRWV 306
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 383 VTMPLAIDLLHPSPASERRKHKLK-RLVPHPNSYFMDVKXPWLLQDYNSF*SRTESGGLR 207
+T P DL + +PA++RR+HK + + + P L + Y + + T GLR
Sbjct: 98 LTQPFPADLPNNAPAAQRREHKKQCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLR 157
Query: 206 WMLND 192
M D
Sbjct: 158 NMFED 162
>04_04_1035 +
30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 304 CHILTLISWMLSXPGCYKITTVFSHAQRVVVCAGCSTILCQPT 176
C L L+ + PG K TV S + C C T+ C PT
Sbjct: 240 CRHLNLMKLIWGPPGTGKTKTV-SALLWALACLKCRTLTCAPT 281
>03_02_0238 -
6687334-6687421,6687456-6687512,6688266-6688351,
6688410-6688589
Length = 136
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 259 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 167
CYKI+ ++SH Q ++ C IL +PTG R
Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121
>09_03_0207 - 13486694-13487047
Length = 117
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 304 CHILTLISWMLSXPGCYKITTVF 236
CH+ T +SWM G TTVF
Sbjct: 94 CHVYTFLSWMHVYVGFTITTTVF 116
>08_01_0392 -
3454224-3454325,3454926-3455035,3455496-3455609,
3455930-3456043,3456474-3456531
Length = 165
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 229 AQRVVVCAGCSTILCQPTGGRARLTEGCS 143
AQ +VC+GC +L P G + CS
Sbjct: 21 AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,240,130
Number of Sequences: 37544
Number of extensions: 202876
Number of successful extensions: 455
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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