Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F19
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...    85   3e-17
Z81114-5|CAB03287.1|  300|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    28   3.1  
AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical...    27   5.5  
U28993-5|AAV58873.1|  298|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U28993-3|AAT81196.1|  635|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U28993-2|AAK31497.1|  720|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = -1

Query: 262 GCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRKQ 128
           GC+KI+TVFSHA  VVVC GC+T+LCQPT G+A+LTEGCSFR+KQ
Sbjct: 39  GCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKKQ 83



 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 29/36 (80%), Positives = 30/36 (83%)
 Frame = -3

Query: 377 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVK 270
           MPLA+DLLHP P  E R HKLKRLV HPNSYFMDVK
Sbjct: 1   MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVK 36


>Z81114-5|CAB03287.1|  300|Caenorhabditis elegans Hypothetical
           protein T04D3.5 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 359 LLHPSPASERRKHKLKRLVPHPNSYFMDVKXPWLLQDYN 243
           L  P   S  +   + RL PHP S+ +D K P +   YN
Sbjct: 49  LSEPKGTSVPKSSPVNRLFPHPLSFELDPKWPAMDSFYN 87


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 265 PGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 167
           P CY+  +VFS   R   C  C  I C     R
Sbjct: 161 PECYRCRSVFSVFTRKHHCRACGQIFCDKCSSR 193


>AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical
           protein Y39B6A.25 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 413 ELLFRLCIKAVTMPLAIDLLHPSPA 339
           + LFR+ IK+V  P  IDL HP+ A
Sbjct: 214 QALFRVEIKSVDEPHLIDLYHPTIA 238


>U28993-5|AAV58873.1|  298|Caenorhabditis elegans Hypothetical
           protein F22D3.2c protein.
          Length = 298

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 280 WMLSXPGCYKITTVFSHAQRVVVCAGC 200
           WML    CY++T   SH Q      GC
Sbjct: 236 WMLKAKICYQMTKQLSHPQVFEHITGC 262


>U28993-3|AAT81196.1|  635|Caenorhabditis elegans Hypothetical
           protein F22D3.2b protein.
          Length = 635

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 280 WMLSXPGCYKITTVFSHAQRVVVCAGC 200
           WML    CY++T   SH Q      GC
Sbjct: 573 WMLKAKICYQMTKQLSHPQVFEHITGC 599


>U28993-2|AAK31497.1|  720|Caenorhabditis elegans Hypothetical
           protein F22D3.2a protein.
          Length = 720

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 280 WMLSXPGCYKITTVFSHAQRVVVCAGC 200
           WML    CY++T   SH Q      GC
Sbjct: 658 WMLKAKICYQMTKQLSHPQVFEHITGC 684


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,358,241
Number of Sequences: 27780
Number of extensions: 168847
Number of successful extensions: 333
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)