Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F16
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    64   3e-24
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    29   0.60 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   4.2  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   7.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   7.4  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    25   9.7  
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.7  

>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 64.1 bits (149), Expect(2) = 3e-24
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
 Frame = -2

Query: 659 LYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADE-FPNIEAFVAKYR 483
           LY+++  L+ LEKA+ +D V   ++ + C  L+ Q++  F   +  + F + E F +KYR
Sbjct: 34  LYSILVALEQLEKAFTKDAVSTSDFNSTCELLIQQWESCFSDERVTQAFGSFEDFCSKYR 93

Query: 482 LDCPAALERIREXKPNLIKDDKGXTNKYIAEIVS 381
           L CP A++RI+E     I D++  +N   +  +S
Sbjct: 94  LQCPRAIKRIQEG----ISDERSQSNSTFSNAIS 123



 Score = 63.3 bits (147), Expect(2) = 3e-24
 Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = -2

Query: 404 KYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQEWLD 228
           K IA +V  FIT +D +RL F A D + P L +L  +MD L+  L      + K+ +WL 
Sbjct: 155 KSIAGLVQNFITTLDAIRLNFIAKDQLHPLLSELIVSMDDLTESLKIQVSCRNKLVQWLI 214

Query: 227 KLSEMSASDELSEAQVRQLVFDLETSY 147
           K++ M+ +D+L++ + R+L++DLE +Y
Sbjct: 215 KINNMNITDQLNDVEKRELLYDLEQAY 241


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 305 LRDTMDRLSMLPDDFEGKLKVQ-EWLDKLSEMSASDELSEAQVRQLVFDL 159
           L+DT DRL++  D+++G+ +V  E ++K+ +   S  L E     L+ DL
Sbjct: 289 LKDTYDRLNIHYDEYDGESQVSLELMNKMVDELRSLNLIEEDGGALLIDL 338


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 91   IKVILDKIQSLCKNLLKAP 147
            I++I DKI SLC + LK P
Sbjct: 1389 IEIIPDKINSLCSDCLKNP 1407


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 518 FPNIEAFVAKYRLDCPAALERIRE 447
           +PN    +  + +DCPA+L  + E
Sbjct: 85  YPNSNVILLCFSIDCPASLNNVTE 108


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 582 CVFLCSHTITHVCLLQV 632
           CV  C+H + HVC L++
Sbjct: 92  CVLPCNHRMCHVCALRL 108


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 555 LHEETTACRCVFLCSHTITHVCLLQVLKGTDDSI 656
           L ++TT  RC F+ S+ I   C+L  L+G +  I
Sbjct: 281 LPQQTTCERCGFISSNRICKACML--LEGLNKGI 312


>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 170

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 538 LKATLYCTRRRLHAAVYSCALTQSRMYAFSRC 633
           LK+    TR++ H A+Y+ A+T S +     C
Sbjct: 35  LKSDDVQTRKKSHIAMYAEAITHSNVLRLEHC 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,048
Number of Sequences: 5004
Number of extensions: 51489
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)