Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F16
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0927 + 33082645-33083286                                        134   4e-32
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    38   0.005
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468           34   0.088
06_01_1013 - 7931756-7935109                                           30   1.4  
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552...    29   3.3  
08_01_0512 + 4468486-4469306,4470165-4470255,4470938-4471054           28   5.8  

>01_06_0927 + 33082645-33083286
          Length = 213

 Score =  134 bits (325), Expect = 4e-32
 Identities = 77/187 (41%), Positives = 106/187 (56%), Gaps = 12/187 (6%)
 Frame = -2

Query: 662 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 483
           +LYA++   + LE+AY+RD V A +Y A C +L+ Q+      +       I  FV  YR
Sbjct: 20  DLYAIIKATEKLERAYVRDLVSAADYEAECLKLISQFNSLSSSLAG--VVTIPRFVEAYR 77

Query: 482 LDCPAALERI-----------REXKPNLIKDDKGXTNKYIAEIVSLFITLMDKLRLEFRA 336
           LDCPAAL R+           R    +        +   IA+ V  FIT MD ++L   A
Sbjct: 78  LDCPAALNRLVQSGVPATVELRAAASSSAPASSAASAAAIAQCVQSFITAMDAVKLNMLA 137

Query: 335 MDMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDL 159
            D ++P L DL  +M +L  +LP DFEGK+KV EWL KL++M A DEL+E Q RQL FDL
Sbjct: 138 NDQVRPLLHDLSTSMGKLGPVLPPDFEGKVKVSEWLAKLNKMGAGDELTEQQARQLNFDL 197

Query: 158 ETSYGAF 138
           +++Y AF
Sbjct: 198 DSAYSAF 204


>12_01_0590 -
           4813764-4814401,4814785-4814872,4815176-4815376,
           4816803-4816830,4817136-4817339,4817352-4819136,
           4820358-4821139
          Length = 1241

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 27/99 (27%), Positives = 53/99 (53%)
 Frame = -2

Query: 416 GXTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 237
           G  N  ++++ +L      KLR   + +  ++ ELR +R  +++L+ + D+ +G+ K  E
Sbjct: 7   GAINSLLSKLAALMGEEYGKLRGVRKEVASLEDELRSMRALLEKLAAM-DELDGQAK--E 63

Query: 236 WLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLHK 120
           W D++ EMS      E  +   +  L+ + G+ N F+HK
Sbjct: 64  WRDQVREMSYD---IEDCIDDFLHQLDKNNGS-NGFVHK 98


>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
          Length = 1078

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
 Frame = -2

Query: 383 SLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGK----LKVQEWLDKLS- 219
           SL   L++ ++ E   M  +  E+R L DT++ L     D E K       Q+W+ KL  
Sbjct: 11  SLGDILIETMKEEASLMLGVSDEIRKLYDTLNSLKKFLQDAEKKHITSSYAQDWVRKLKG 70

Query: 218 ---EMSASDELSEAQVRQLVFDLETSYGAFNKFL 126
              E S   +L + +  +    ++TS G F+ FL
Sbjct: 71  AMYEASDITDLVQIKAEERRISMDTSSGCFHSFL 104


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -3

Query: 277 CCLMTLKGNSRCKSG*ISYLR-CQHRMNCPKHKCDSWC 167
           C  M LKGN   K G  S    C H ++C  H C   C
Sbjct: 359 CGEMELKGNLSEKDGVFSCSEACSHMLSCGNHACQDIC 396


>07_03_0696 -
           20754773-20754821,20754930-20755028,20755107-20755226,
           20755317-20755402,20756013-20756109,20756181-20756268,
           20756358-20756454,20756797-20756892,20757029-20757125,
           20757571-20757689,20758559-20758616,20758751-20758857
          Length = 370

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = -2

Query: 656 YAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEF-----PNIEAFVA 492
           +AVVC + +LE  Y+RD   A E+ A   R ++  +   K+V  D +     P+ +    
Sbjct: 296 WAVVCDVWYLEPQYLRDGETAIEF-AERVRDMIAARAGLKKVPWDGYLKHNRPSPKHTEE 354

Query: 491 KYRLDCPAALERIRE 447
           K R+   + L R+ E
Sbjct: 355 KQRIFADSVLRRLEE 369


>08_01_0512 + 4468486-4469306,4470165-4470255,4470938-4471054
          Length = 342

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -2

Query: 314 LRDLRDTMDR-LSMLPDDFEGKLKVQEWLDKLSEMSAS-DELSEAQVRQLVFDLETSYGA 141
           +RD   TM   L ML D  E   ++++W DK+ E++   ++  +A   ++  + + S G 
Sbjct: 43  IRDELSTMRAALQMLADSEELNPRMKDWRDKVRELAYDMEDCIDAFTSRVDHNNDGSTG- 101

Query: 140 FNKFLHK 120
           F +F HK
Sbjct: 102 FKEFFHK 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,863
Number of Sequences: 37544
Number of extensions: 322552
Number of successful extensions: 827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)