Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_F16
(663 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC019321-1|AAH19321.1| 221|Homo sapiens vacuolar protein sortin... 253 5e-67
BC006485-1|AAH06485.1| 221|Homo sapiens vacuolar protein sortin... 253 5e-67
AF316887-1|AAK00314.1| 221|Homo sapiens vacuolar sorting protei... 253 5e-67
AF182844-1|AAF00499.1| 221|Homo sapiens VPS28 protein protein. 253 5e-67
BC050713-1|AAH50713.1| 233|Homo sapiens vacuolar protein sortin... 200 5e-51
AK131313-1|BAD18477.1| 244|Homo sapiens protein ( Homo sapiens ... 32 1.6
Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)... 31 3.7
U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain pro... 31 3.7
M59832-1|AAA63215.1| 1130|Homo sapiens merosin protein. 31 3.7
AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.7
AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.7
AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.7
AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.7
AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.7
AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (meros... 31 3.7
AB208922-1|BAD92159.1| 1853|Homo sapiens laminin alpha 2 subunit... 31 3.7
AK057946-1|BAB71619.1| 517|Homo sapiens protein ( Homo sapiens ... 30 6.4
>BC019321-1|AAH19321.1| 221|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 221
Score = 253 bits (619), Expect = 5e-67
Identities = 118/180 (65%), Positives = 146/180 (81%)
Frame = -2
Query: 662 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 483
EL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I+ F K+R
Sbjct: 41 ELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFR 100
Query: 482 LDCPAALERIREXKPNLIKDDKGXTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDL 303
LDCP A+ERI+E +P IKDDKG N+ IA++VSLFIT+MDKLRLE RAMD IQP+LR+L
Sbjct: 101 LDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLREL 160
Query: 302 RDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLH 123
+TM R+S LP DFEG+ V +WL LS MSASDEL ++QVRQ++FDLE++Y AFN+FLH
Sbjct: 161 METMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
>BC006485-1|AAH06485.1| 221|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 221
Score = 253 bits (619), Expect = 5e-67
Identities = 118/180 (65%), Positives = 146/180 (81%)
Frame = -2
Query: 662 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 483
EL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I+ F K+R
Sbjct: 41 ELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFR 100
Query: 482 LDCPAALERIREXKPNLIKDDKGXTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDL 303
LDCP A+ERI+E +P IKDDKG N+ IA++VSLFIT+MDKLRLE RAMD IQP+LR+L
Sbjct: 101 LDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLREL 160
Query: 302 RDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLH 123
+TM R+S LP DFEG+ V +WL LS MSASDEL ++QVRQ++FDLE++Y AFN+FLH
Sbjct: 161 METMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
>AF316887-1|AAK00314.1| 221|Homo sapiens vacuolar sorting protein
28 protein.
Length = 221
Score = 253 bits (619), Expect = 5e-67
Identities = 118/180 (65%), Positives = 146/180 (81%)
Frame = -2
Query: 662 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 483
EL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I+ F K+R
Sbjct: 41 ELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFR 100
Query: 482 LDCPAALERIREXKPNLIKDDKGXTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDL 303
LDCP A+ERI+E +P IKDDKG N+ IA++VSLFIT+MDKLRLE RAMD IQP+LR+L
Sbjct: 101 LDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLREL 160
Query: 302 RDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLH 123
+TM R+S LP DFEG+ V +WL LS MSASDEL ++QVRQ++FDLE++Y AFN+FLH
Sbjct: 161 METMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
>AF182844-1|AAF00499.1| 221|Homo sapiens VPS28 protein protein.
Length = 221
Score = 253 bits (619), Expect = 5e-67
Identities = 118/180 (65%), Positives = 146/180 (81%)
Frame = -2
Query: 662 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 483
EL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I+ F K+R
Sbjct: 41 ELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFR 100
Query: 482 LDCPAALERIREXKPNLIKDDKGXTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDL 303
LDCP A+ERI+E +P IKDDKG N+ IA++VSLFIT+MDKLRLE RAMD IQP+LR+L
Sbjct: 101 LDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLREL 160
Query: 302 RDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLH 123
+TM R+S LP DFEG+ V +WL LS MSASDEL ++QVRQ++FDLE++Y AFN+FLH
Sbjct: 161 METMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
>BC050713-1|AAH50713.1| 233|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 233
Score = 200 bits (487), Expect = 5e-51
Identities = 93/143 (65%), Positives = 114/143 (79%)
Frame = -2
Query: 662 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 483
EL+AVV T+Q LEKAY++DCV EYTAACSRLLVQYK AF+QVQ E +I+ F K+R
Sbjct: 41 ELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFR 100
Query: 482 LDCPAALERIREXKPNLIKDDKGXTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDL 303
LDCP A+ERI+E +P IKDDKG N+ IA++VSLFIT+MDKLRLE RAMD IQP+LR+L
Sbjct: 101 LDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLREL 160
Query: 302 RDTMDRLSMLPDDFEGKLKVQEW 234
+TM R+S LP DFEG+ V +W
Sbjct: 161 METMHRMSHLPPDFEGRQTVSQW 183
>AK131313-1|BAD18477.1| 244|Homo sapiens protein ( Homo sapiens
cDNA FLJ16301 fis, clone PLACE7000333. ).
Length = 244
Score = 32.3 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = -2
Query: 449 EXKPNLIKDDKGXTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLP 270
+ KP IK DKG + +T+++ RA I+ LRDL+ +D +++
Sbjct: 83 DFKPTKIKGDKGHYIMVKGSMQQEELTILNIYAPNTRAPRFIKQVLRDLQRDLDSHTIIM 142
Query: 269 DDFEGKLKVQE 237
DF +L + E
Sbjct: 143 GDFNTELSILE 153
>Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)
protein.
Length = 3110
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 134 K 132
K
Sbjct: 2071 K 2071
>U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain protein.
Length = 3110
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 134 K 132
K
Sbjct: 2071 K 2071
>M59832-1|AAA63215.1| 1130|Homo sapiens merosin protein.
Length = 1130
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 33 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 90
Query: 134 K 132
K
Sbjct: 91 K 91
>AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 134 K 132
K
Sbjct: 2071 K 2071
>AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 134 K 132
K
Sbjct: 2071 K 2071
>AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 134 K 132
K
Sbjct: 2071 K 2071
>AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 134 K 132
K
Sbjct: 2071 K 2071
>AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 134 K 132
K
Sbjct: 2071 K 2071
>AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
congenital muscular dystrophy) protein.
Length = 3122
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 2013 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 2070
Query: 134 K 132
K
Sbjct: 2071 K 2071
>AB208922-1|BAD92159.1| 1853|Homo sapiens laminin alpha 2 subunit
precursor variant protein.
Length = 1853
Score = 31.1 bits (67), Expect = 3.7
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -2
Query: 314 LRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFN 135
LR L DT+ +LS +P+D KL+ + + + +A D L AQ+ +L +L+ +N
Sbjct: 748 LRTLNDTLGKLSAIPNDTAAKLQAVKDKARQANDTAKDVL--AQITELHQNLDGLKKNYN 805
Query: 134 K 132
K
Sbjct: 806 K 806
>AK057946-1|BAB71619.1| 517|Homo sapiens protein ( Homo sapiens
cDNA FLJ25217 fis, clone REC08938, highly similar to
Oryctolagus cuniculus Na+/glucose cotransporter-related
protein ).
Length = 517
Score = 30.3 bits (65), Expect = 6.4
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 460 SKAAGQSNLYLATKASILGNS-SACTCLKATLYC 558
S + +S+ YL+T S G S SACTCL YC
Sbjct: 16 STSPQRSSPYLSTFRSATGASGSACTCLSCPCYC 49
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,728,109
Number of Sequences: 237096
Number of extensions: 1761156
Number of successful extensions: 8007
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8006
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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