Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_F16
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-11|CAB54493.1| 210|Caenorhabditis elegans Hypothetical... 174 4e-44
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 31 0.73
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 31 0.73
U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical pr... 30 1.3
U18385-1|AAA62505.1| 276|Caenorhabditis elegans collagen protein. 30 1.3
AC025715-8|AAK68439.2| 531|Caenorhabditis elegans Enhanced rnai... 30 1.3
Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical p... 29 3.9
Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z29095-7|CAA82352.2| 319|Caenorhabditis elegans Hypothetical pr... 28 5.1
X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein. 28 5.1
Z99281-55|CAN99710.1| 74|Caenorhabditis elegans Hypothetical p... 27 9.0
>AL110500-11|CAB54493.1| 210|Caenorhabditis elegans Hypothetical
protein Y87G2A.10 protein.
Length = 210
Score = 174 bits (424), Expect = 4e-44
Identities = 88/181 (48%), Positives = 122/181 (67%)
Frame = -2
Query: 662 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 483
EL+AV+ L+HLEK + RD V A EY + C +L+ QYKV + V +IE F KYR
Sbjct: 29 ELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQYKVTMRLVHGAT--SIEDFAKKYR 86
Query: 482 LDCPAALERIREXKPNLIKDDKGXTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDL 303
L CPAA+ERIRE +P +KDD+G K+IA IV FIT +D LRL RA+D + P L DL
Sbjct: 87 LHCPAAIERIREGRPITVKDDQGNVLKHIASIVEQFITFLDALRLNTRAVDDLYPGLDDL 146
Query: 302 RDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLH 123
+ ++ S +P D KV++W D+LS M+ASDE+S+ RQ++FD+E++Y AFNK L+
Sbjct: 147 YNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEISDEDARQMIFDVESAYQAFNKALN 206
Query: 122 K 120
+
Sbjct: 207 E 207
>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
protein F22B5.7 protein.
Length = 1415
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -2
Query: 308 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKF 129
D D D LS +PD F+ ++ ++W ++ + +L A + D + +YGA +
Sbjct: 291 DFLDAFDVLSKMPDGFDTNIESKKWQERKEALEGLLQLITANPK---LDPKANYGALVER 347
Query: 128 LHK 120
L K
Sbjct: 348 LQK 350
>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
Length = 1415
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -2
Query: 308 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKF 129
D D D LS +PD F+ ++ ++W ++ + +L A + D + +YGA +
Sbjct: 291 DFLDAFDVLSKMPDGFDTNIESKKWQERKEALEGLLQLITANPK---LDPKANYGALVER 347
Query: 128 LHK 120
L K
Sbjct: 348 LQK 350
>U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical
protein T25B6.2 protein.
Length = 798
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -2
Query: 299 DTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYGAFNKFLHK 120
D D+ +++ ++F+G + W+D S+ A ++ S++ V+ + E +G FN F
Sbjct: 458 DVKDQTTLIINNFQGMIDSLNWMDTFSKNRAHNK-SDSLVKNFGWP-EAMFGDFNDFTTV 515
Query: 119 D 117
D
Sbjct: 516 D 516
>U18385-1|AAA62505.1| 276|Caenorhabditis elegans collagen protein.
Length = 276
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = -2
Query: 323 QPELRDLRDTMDRL--SMLPD--DFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLE 156
QPE+++ ++TM+RL + P+ D +G + E+ DK M D++ + LV L
Sbjct: 163 QPEIQEHQETMERLERTETPEDQDHQGIQERMEFQDKRERMPHQDQMLDIVHAHLV-QLT 221
Query: 155 TSYGAFNKFLHK-D*ILSRITLIRYIEYCWKTCITKHMYQCNL 30
AF +K I + + + + C TC +K+ NL
Sbjct: 222 RLNSAFLCLFYKFSNIPNCVLFLHFFLNCNFTCKSKYFSFSNL 264
>AC025715-8|AAK68439.2| 531|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 5 protein.
Length = 531
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Frame = -2
Query: 563 LVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIREXKPNLIKDDKGXTN-----KY 399
LV ++ Q EF NI + AK+++ R +P+L+ + G N K
Sbjct: 139 LVHLSDSWTDTQCTEFRNIVSKFAKFQITANQCDVDFRSDRPSLLVNLYGLPNGTEIDKK 198
Query: 398 IAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSML 273
+A +++ + + +F M+ P+L +L D L ++
Sbjct: 199 VAIEEICAVSMQNVMVSQFPTNFMVNPKLEELDKEQDHLDVI 240
>Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical
protein T05G5.9b protein.
Length = 658
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 332 DMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQE 237
DMI ELRDL +D+L+ L D E +K QE
Sbjct: 122 DMISLELRDLESKVDQLNRALRDKTEALIKAQE 154
>Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical
protein T05G5.9a protein.
Length = 660
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 332 DMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQE 237
DMI ELRDL +D+L+ L D E +K QE
Sbjct: 124 DMISLELRDLESKVDQLNRALRDKTEALIKAQE 156
>Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical
protein DY3.2 protein.
Length = 566
Score = 28.3 bits (60), Expect = 5.1
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = -2
Query: 497 VAKYRLDCPAALERIREXKPNLIKDDKGXTNKYIAEIVSLFI-TLMDKLRLEFRAMDMIQ 321
+AKYR++ AA +++ KP + K ++ AE +L ++ D+ + + + +
Sbjct: 113 LAKYRIEYDAAKVEVKKLKPQVEKLERELAG---AEEQALHAQSIADQSQAKQKTLQARN 169
Query: 320 PELRDLRDTMDRLSM-LPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYG 144
+L D + + ++ L D EG K E D+ +A++ +A L F L+ G
Sbjct: 170 DKLVVENDDLKKQNITLRDTVEGLKKAVE--DETLLRTAANNKIKALEEDLAFALQQHKG 227
Query: 143 AFNKFLHK 120
+ HK
Sbjct: 228 ELEEVRHK 235
>Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical
protein F40G12.10 protein.
Length = 438
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 605 CVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRE 447
C Y A + +A +++QA E PNI+ R PAA+E + +
Sbjct: 336 CAIVSNYGAGRAGSFFVAVLAIEKLQAGEAPNIKEIALSVRSQRPAAIETLSQ 388
>Z29095-7|CAA82352.2| 319|Caenorhabditis elegans Hypothetical
protein R10E11.7 protein.
Length = 319
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +2
Query: 92 LKLFLIKFSPCVKIY*KPHMRSLGRTPAVALVLRTVHPMLTSQITYLATLAP*VSLQSHQ 271
+ ++++ + K Y K + S+G +V + +HPMLT + + +A VS+Q+ Q
Sbjct: 62 IMVYILPYYMSDKTY-KTYRDSIGAMISVGVTFNYLHPMLTLILMTINRIAVVVSMQASQ 120
>X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein.
Length = 566
Score = 28.3 bits (60), Expect = 5.1
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = -2
Query: 497 VAKYRLDCPAALERIREXKPNLIKDDKGXTNKYIAEIVSLFI-TLMDKLRLEFRAMDMIQ 321
+AKYR++ AA +++ KP + K ++ AE +L ++ D+ + + + +
Sbjct: 113 LAKYRIEYDAAKVEVKKLKPQVEKLERELAG---AEEQALHAQSIADQSQAKQKTLQARN 169
Query: 320 PELRDLRDTMDRLSM-LPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVFDLETSYG 144
+L D + + ++ L D EG K E D+ +A++ +A L F L+ G
Sbjct: 170 DKLVVENDDLKKQNITLRDTVEGLKKAVE--DETLLRTAANNKIKALEEDLAFALQQHKG 227
Query: 143 AFNKFLHK 120
+ HK
Sbjct: 228 ELEEVRHK 235
>Z99281-55|CAN99710.1| 74|Caenorhabditis elegans Hypothetical
protein Y57G11C.12a protein.
Length = 74
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 542 FKQVQADEFPNIEAFVAKYRLDCPAALERIREXKPNLIK 426
F+Q+ AD NI F++ + L C L + + K NL++
Sbjct: 20 FEQIIADNIKNIANFLSSFELSCRTKLATLSD-KLNLLE 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,668
Number of Sequences: 27780
Number of extensions: 300919
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -