Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F14
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   1.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.5  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   2.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   3.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   8.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.0  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 454 IVDQHATEVHGRAVTEHSPQL 516
           I+D+ AT+VHG  V    P++
Sbjct: 68  IIDEAATKVHGTTVRVRPPKV 88


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 454 IVDQHATEVHGRAVTEHSPQL 516
           I+D+ AT+VHG  V    P++
Sbjct: 382 IIDEAATKVHGTTVRVRPPKV 402


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 454 IVDQHATEVHGRAVTEHSPQL 516
           I+D+ AT+VHG  V    P++
Sbjct: 615 IIDEAATKVHGTTVRVRPPKV 635


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 454 IVDQHATEVHGRAVTEHSPQL 516
           I+D+ AT+VHG  V    P++
Sbjct: 615 IIDEAATKVHGTTVRVRPPKV 635


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 556 NAKCLQEDILHMRCTIARRGFGGQAKQCTIAVL 654
           N + + EDI    CT     F G  K C I VL
Sbjct: 39  NGQFVPEDINPDLCTHINYAFVGLDKDCNIQVL 71


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 496 LLLSHGLQLRAGPLSVYRSIHRQSRNRFINII*SRETVD 380
           L + HG+++R  P   YR +   +   F  +   R+ VD
Sbjct: 202 LRILHGVEIRDYPKFPYRGVMIDTARNFFPVDLIRKVVD 240


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 414 LSTLSEAERQLIDHCESDWGYSQMP 340
           +S  S    Q+ID+   +W Y + P
Sbjct: 31  ISDNSGINSQMIDYSRPNWSYLRTP 55


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 414 LSTLSEAERQLIDHCESDWGYSQMP 340
           +S  S    Q+ID+   +W Y + P
Sbjct: 51  ISDNSGINSQMIDYSRPNWSYLRTP 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,998
Number of Sequences: 336
Number of extensions: 3893
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)