Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_F14
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 31 1.3
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708... 30 1.7
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 30 2.3
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 30 2.3
04_04_0793 - 28100562-28100789,28100897-28100975,28101060-281014... 29 4.0
01_05_0663 - 24119355-24120101 28 6.9
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928... 28 9.2
09_03_0181 + 13149531-13149601,13150772-13151126,13152527-131526... 28 9.2
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 609 PGDSATHMQDVLLQAFC-VENDIHVIKVDCETKLRRMLGYC 490
P +SA H+ DVL C ++D V V C + M GYC
Sbjct: 523 PWESACHVPDVLPTHRCRTDDDCGVEAVSCRRRTCSMAGYC 563
>01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,
7080866-7083890,7084253-7084596
Length = 1251
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -3
Query: 591 HMQDVLLQAFCVENDIHVIKVDCETKLRRMLGYCSPMDFSCVLVHY 454
H+++V +++F E V+++ L ++L CS M+F +++HY
Sbjct: 999 HLEEVAIRSFDAE--CRVLRMARHRNLIKVLNTCSNMEFRALVLHY 1042
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -3
Query: 732 IKTVXRRACVEKRLTXGLLPAIQYLSKNCNGALFCLTAEAPPGDSATHMQDVLLQAFCVE 553
++ V +++ L GL A + + K+ A C+ AE D +++ L++A C E
Sbjct: 25 LQLVMKKSSAHDGLVKGLREAAKAIEKHA--AQLCVLAE--DCDQPDYVK--LVKALCAE 78
Query: 552 NDIHVIKVDCETKLRRMLGYC 490
+++H++ V L G C
Sbjct: 79 HNVHLVTVPSAKTLGEWAGLC 99
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -3
Query: 732 IKTVXRRACVEKRLTXGLLPAIQYLSKNCNGALFCLTAEAPPGDSATHMQDVLLQAFCVE 553
++ V +++ L GL A + + K+ A C+ AE D +++ L++A C E
Sbjct: 25 LQLVMKKSSAHDGLVKGLREAAKAIEKHA--AQLCVLAE--DCDQPDYVK--LVKALCAE 78
Query: 552 NDIHVIKVDCETKLRRMLGYC 490
+++H++ V L G C
Sbjct: 79 HNVHLVTVPSAKTLGEWAGLC 99
>04_04_0793 -
28100562-28100789,28100897-28100975,28101060-28101434,
28101534-28101882,28102000-28102102,28102136-28102454,
28102617-28102714,28103146-28103217,28103330-28103479
Length = 590
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 148 YQFLNYFNSKQTPKHSQADLMQLPNNRWRCA*AKMATYLKNNIAKF 285
YQ ++ TP HS D + +P+N RC A A+ ++++
Sbjct: 545 YQGQQFYLRVYTPSHSFRDELPIPSNALRCGRATNASGRSRTLSRY 590
>01_05_0663 - 24119355-24120101
Length = 248
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 543 EYHFQRKMLAGGHLAYALHYRQAGLRRSG 629
+Y Q + L + A +LH RQA LRR G
Sbjct: 204 DYREQVRRLEASNYALSLHLRQADLRRGG 232
>12_01_0935 -
9277421-9277584,9277908-9278111,9280742-9280982,
9282165-9282494
Length = 312
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = -3
Query: 663 YLSKNCNGALFC-----LTAEAPPGDSATHMQDVLLQAFCVEND---IHVIK-VDCETKL 511
Y+S NC A FC LT+ PP + D ++AF V+ D + IK +D L
Sbjct: 154 YVSSNCFAAYFCPNLSQLTSFLPPKERVNVYGDGNVKAFFVDEDDVGTYTIKSIDDPRTL 213
Query: 510 RRMLGYCSPMD 478
+ + Y P D
Sbjct: 214 NKTI-YIRPQD 223
>09_03_0181 +
13149531-13149601,13150772-13151126,13152527-13152634,
13152698-13152775,13154828-13154915,13156777-13157177
Length = 366
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 81 MKKTLLHFKTVAV*HLHFTNCSLSIFKLF*FKTNPKTFSSRLNATTKQQMALCLSQNGD 257
MKKT ++ + V L F LS+ L T KT+ R + +++Q C Q+ D
Sbjct: 111 MKKTKFNWMEIKVFFLRFIGMKLSMLTLLSVMTRRKTY-FRSGSFSRRQCDWCHDQDDD 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,218,107
Number of Sequences: 37544
Number of extensions: 395296
Number of successful extensions: 870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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