Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_F06
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 58 1e-09
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.0
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 5.2
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 6.8
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 6.8
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 25 6.8
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 9.0
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 58.0 bits (134), Expect = 1e-09
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = -1
Query: 605 TXRADIAFRLALSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDVGAFER 426
T + A L+++ +L D+Y+ GELL HP+ L GT +EW +LV A++VGD+ FER
Sbjct: 197 TELVERAVDLSVAAILG-DIYNFGELLLHPVFELLVGTQHEWLHDLVIAMNVGDLPLFER 255
Query: 425 IRAKSN-CDELHKADRQLRQKLRFCA 351
+ + N L + L QK+R A
Sbjct: 256 LMGQINKMPLLQSSVALLGQKIRLMA 281
Score = 58.0 bits (134), Expect = 1e-09
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -3
Query: 420 GQIQLRRITQSRQAT-ETEIAILCLMEMAFNKSSSQRKLSXEEIAREARIPLDEVELLIM 244
GQI + QS A +I ++ L+E+ F +QR L+ + IAR RIP +EVELLIM
Sbjct: 258 GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIM 317
Query: 243 KALAEKLIRGHIDQV 199
+AL+ LI G ID+V
Sbjct: 318 RALSVGLITGVIDEV 332
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 488 WACPSENVGLGEPTIHPNHIHPEPALQREL 577
W CP EN+ PT P+H+ P ++ + L
Sbjct: 701 WRCPRENLTKWYPTRLPDHMAPMESINQIL 730
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 430 SKAPTSPTDTALTSSQAHSLGVPLRECRIG*ANNSPKSYTSGASTPERASLKAISARXVA 609
S +P+S + + LTSS + +P ++S S +S ++ +S +I + +
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
Query: 610 GRASP 624
+SP
Sbjct: 279 SSSSP 283
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 318 QRKLSXEEIAREARIPLDEVELLIMKALAEKLIRGHI 208
+ LS + + +E + +DE+E+ L E+L GH+
Sbjct: 976 EEALSIQLLQKETMLRIDELEIERNNTLLERLAIGHV 1012
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 421 RILSKAPTSPTDTALTSSQAHSLGVPLRECRIG*ANNSPKSYTS 552
RI PT+ T + SLG+ + E +G P+SYTS
Sbjct: 485 RIRVGGPTNGVLTYTVQADVWSLGLTILEMALGAYPYPPESYTS 528
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 506 SLRGTPNEWACELVKAVSVGD 444
SLR WAC++ ++VGD
Sbjct: 91 SLRHVEKSWACKICTFINVGD 111
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 411 QLRRITQSRQATETEIAILCLMEMAFN----KSSSQRKLSXEEIAREAR 277
+LR + R + AI L E A+ + S +RK EEI REA+
Sbjct: 162 ELREKSARRSRVNIDDAIALLKEDAYGSIEEEESKKRKFEEEEIDREAK 210
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 418 ARILSKAPTSPTDTALTSSQ-AHSLGVPLRECR 513
A +L K T T LT Q A +G+P++ECR
Sbjct: 36 AYVLHKIRTILTFGRLTDEQTALLMGIPIKECR 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,536
Number of Sequences: 5004
Number of extensions: 43049
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -