Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_F06
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971... 63 2e-10
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 54 9e-08
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 31 0.75
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232... 30 1.7
01_01_1222 + 9877607-9877691,9879235-9879390,9880070-9880148,988... 29 2.3
12_02_0315 - 17417161-17417401,17419426-17419616 28 5.3
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 28 5.3
07_03_0451 + 18340166-18340533,18340576-18341006,18343057-183431... 27 9.3
04_01_0403 + 5283830-5284106,5284996-5285179,5285801-5286015,528... 27 9.3
>01_05_0085 -
17995800-17995985,17996724-17996823,17996919-17997115,
17997836-17997916,17998046-17998492,17998774-17998920
Length = 385
Score = 63.3 bits (147), Expect = 2e-10
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 5/194 (2%)
Frame = -1
Query: 620 EALPATXRADIAFRLALSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDV 441
E+L + + D+AF L+L+ +L ++Y+ GELLAHPI++SL GT EW +++A + G++
Sbjct: 190 ESLSESFKLDLAFDLSLAALLGDNIYNFGELLAHPIINSLIGTKVEWVYHMLQAFNTGNL 249
Query: 440 GAFERI-----RAKSNCDELHKADRQLRQKLRFCA*WRWPSINPHLRGSCXXXXXXXXPE 276
++ + A S L + +R+L +K+ P + +
Sbjct: 250 ALYQELCKVHNAALSAQPALVQNERKLLEKINILCLMEIIFTRPSEDRTIPLSVIAERTK 309
Query: 275 YPSTKXXXXXXXXXXXXXLEDI*IRCXRARTVQWVRPRXXXXXXAVLTXARVDAWREXVS 96
+ +E I V WV+PR R+DAW V
Sbjct: 310 LSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRERLDAWVGKVH 369
Query: 95 AAADLLXTXQPDLI 54
+ PDL+
Sbjct: 370 TTLLSVEAETPDLV 383
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = -3
Query: 399 ITQSRQATETEIAILCLMEMAFNKSSSQRKLSXEEIAREARIPLDEVELLIMKALAEKLI 220
+ Q+ + +I ILCLME+ F + S R + IA ++ + +VE L+MK+L+ LI
Sbjct: 269 LVQNERKLLEKINILCLMEIIFTRPSEDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLI 328
Query: 219 RGHIDQVRS 193
G ID+V S
Sbjct: 329 EGIIDEVDS 337
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 54.0 bits (124), Expect = 9e-08
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = -3
Query: 399 ITQSRQATETEIAILCLMEMAFNKSSSQRKLSXEEIAREARIPLDEVELLIMKALAEKLI 220
+ Q+ + +I ILCLME+ F+++S R + IA ++ + +VE L+MK+L+ LI
Sbjct: 275 LVQNERKLLEKINILCLMEIIFSRASEDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLI 334
Query: 219 RGHIDQVRS 193
G ID+V S
Sbjct: 335 EGIIDEVDS 343
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Frame = -1
Query: 620 EALPATXRADIAFRLALSGVLAPDVYDLGELLAHPI------LHSLRGTPNEWACELVKA 459
E+L + + D+AF L+L+ +L ++Y+ GELLAHPI ++SL GT EW +++A
Sbjct: 190 ESLSESFKLDLAFDLSLAALLGDNIYNFGELLAHPINCKASKINSLIGTKVEWVYHMLQA 249
Query: 458 VSVGDVGAFERI 423
+ G++ ++ +
Sbjct: 250 FNTGNLALYQEL 261
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 31.1 bits (67), Expect = 0.75
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 212 CPLINFSAKAFMMRSSTSSRGILASRAISSNDSFL*DEDLLKAISIKHRIAISVSVACL- 388
CP I+ A++F + S +L S+ D D+D LK S+ I S + L
Sbjct: 645 CPAIDSVARSFSWEDTNSGSPLLGGLKHSNVDDADYDDDELKCYSLVQEIVSSAGLCHLQ 704
Query: 389 LCVIRRSWIWPGS 427
L ++ W P S
Sbjct: 705 LSMVFTGWYLPES 717
>02_02_0658 +
12720873-12720906,12721201-12721664,12723069-12723227,
12723308-12723424,12723570-12723721,12724594-12724685,
12724787-12725464,12725551-12725803,12725804-12725888,
12725969-12726037,12726489-12726668,12726989-12726994,
12727526-12727624
Length = 795
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 467 PVHRPIHWACPSENVGLGEPTIHPNHIHPE 556
PV + +W ++N+ G PT+H +H PE
Sbjct: 387 PVGKSSYWNNRADNIFHGSPTLHNSHSFPE 416
>01_01_1222 +
9877607-9877691,9879235-9879390,9880070-9880148,
9881471-9881711,9881794-9881868,9881960-9882094,
9882634-9882821,9882915-9882983,9883060-9883150,
9883262-9883396,9883675-9883740,9883823-9883935,
9884020-9884110
Length = 507
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 294 IAREARIPLDEVELLIMKALAEKLIRGHIDQV 199
+ E P +VE L++ + + I+GHIDQV
Sbjct: 438 LTEELNFPEKDVEQLLVSLILDNRIQGHIDQV 469
>12_02_0315 - 17417161-17417401,17419426-17419616
Length = 143
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 469 SSQAHSLGVPLRECRIG*ANNSPKSYTSGASTPERASLKAISARXVAGRASPP 627
+ QA G P ++ R G N K YT ++ P + A A A + PP
Sbjct: 72 TDQAWEFGKPSQKRRFGSQGNEEK-YTRASTEPPAVAAAAAKAAAAAAKRPPP 123
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 410 NCDELHKA-DRQLRQKLRFCA*WRWPSINPHLRGSC 306
N E HKA RQL + L WP+ HL GSC
Sbjct: 186 NPSEEHKAKQRQLIESLTNSVSKEWPNAQLHLYGSC 221
>07_03_0451 +
18340166-18340533,18340576-18341006,18343057-18343184,
18343329-18343958,18344761-18345480
Length = 758
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 563 VLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGD 444
VL P +Y +LL+ ILH+ + +W ++ V GD
Sbjct: 283 VLEPYIYPYRQLLSISILHTFHFSGGKWLKDVTVDVQQGD 322
>04_01_0403 +
5283830-5284106,5284996-5285179,5285801-5286015,
5286616-5286736,5286862-5286974,5287823-5288055,
5288717-5288832,5288949-5289047,5289512-5289691,
5289816-5289903,5289999-5290208,5290599-5290820
Length = 685
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 475 VNWSKLYRLETLVPSRGSGPNPTATNYTKQTGN*DRNCDSVLNG 344
++W KL +L L S P TAT + +QTG D+ C L+G
Sbjct: 177 LDWEKLLKLRCLDGSFHCSPASTATAF-QQTG--DQKCFEYLDG 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,638
Number of Sequences: 37544
Number of extensions: 336119
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -