Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F06
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    34   0.096
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    28   4.8  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    27   8.4  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      27   8.4  

>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 27/57 (47%), Positives = 43/57 (75%)
 Frame = -3

Query: 369 EIAILCLMEMAFNKSSSQRKLSXEEIAREARIPLDEVELLIMKALAEKLIRGHIDQV 199
           +I ++ +ME+A ++ +  R +S +EIA + +IP DEVE L+MKAL++ LIRG I+QV
Sbjct: 280 KIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVMKALSKDLIRGDINQV 336



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 1/166 (0%)
 Frame = -1

Query: 587 AFRLALSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDVGAFERIRAK-S 411
           A  L  + +L  +V++ GELLAHPIL SL GT   W  +++ A + GD+  F  +     
Sbjct: 206 AVLLGFAALLGENVHNFGELLAHPILKSLEGTRERWIVDVLLAFNSGDLTRFFSLEGDWG 265

Query: 410 NCDELHKADRQLRQKLRFCA*WRWPSINPHLRGSCXXXXXXXXPEYPSTKXXXXXXXXXX 231
             D+L K    L  K+R  A        P    S          + P  +          
Sbjct: 266 GWDDLKKQKDFLTAKIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVMKALS 325

Query: 230 XXXLEDI*IRCXRARTVQWVRPRXXXXXXAVLTXARVDAWREXVSA 93
              +     +  +   V WV+PR       +    R+ AWR  V++
Sbjct: 326 KDLIRGDINQVEQVVYVTWVQPRVLDNPQIMQMATRISAWRNDVNS 371


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
           protein Y76B12C.7 protein.
          Length = 1454

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 351 LMEMAFNKSSSQRKLSXEEIAREARIPLDEVELL--IMKALAEKLIRGHI 208
           L+++   +   +RK   ++ A+EA +P DE E L   MK L E+++   I
Sbjct: 809 LVDLTVEEEEKERKAKAQQAAKEASVPTDEAEQLNTEMKQLCERVLEAQI 858


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 140 VLTXARVDAWREXVSAAADLLXTXQPDLIIDLKIHSEIM 24
           VLT A  D  R+ + A  D +   QPD++  +  HS+++
Sbjct: 471 VLTIANEDLCRKSIKAYEDEVSKKQPDVLFIIDKHSKLL 509


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 427 LSKAPTSPTDTALTSSQAHSLGVPLRECRIG*ANNSPKS 543
           L   PT+ T  + T++  HS G P     IG + NS  S
Sbjct: 756 LHSIPTAMTSLSTTTTPTHSQGAPSTSTPIGGSGNSTLS 794


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 427 LSKAPTSPTDTALTSSQAHSLGVPLRECRIG*ANNSPKS 543
           L   PT+ T  + T++  HS G P     IG + NS  S
Sbjct: 756 LHSIPTAMTSLSTTTTPTHSQGAPSTSTPIGGSGNSTLS 794


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,751,432
Number of Sequences: 27780
Number of extensions: 254638
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)