Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F06
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.5  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   9.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 519 VSQQFTQIIYIRSQHSRES*SEGDIST 599
           V+Q+F+++I  + QH+R     G + T
Sbjct: 259 VNQKFSELIQSKPQHARRKVLAGIVQT 285


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 568 LECWLRMYMIWVNCWLTQSYI 506
           + C + + + WV+ WL QS +
Sbjct: 250 IPCCMLVIVSWVSFWLDQSAV 270


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 568 LECWLRMYMIWVNCWLTQSYI 506
           + C + + + WV+ WL QS +
Sbjct: 250 IPCCMLVIVSWVSFWLDQSAV 270


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 592 ISPSD*LSLECWLRM 548
           ++P D  SL CWL+M
Sbjct: 111 VNPYDRDSLSCWLQM 125


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 329 LLKAISIKHRIAISVS 376
           LLK I I H IA++ S
Sbjct: 168 LLKQIEIPHNIAVNAS 183


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 347 IKHRIAISVSVACLLC 394
           +K+ I +S+ + CL+C
Sbjct: 1   MKYSILLSLLITCLIC 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,163
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)