Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F02
         (432 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.18 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.6  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    21   6.6  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    21   6.6  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    21   6.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 284  SFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPAPS 421
            SF+ +  +   +E  PS+  PLTS R+         C ++A+PA S
Sbjct: 897  SFHSNGAK-EEDEDKPSV-SPLTSPRQPAETHAGSPCRNSASPASS 940


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 344 PLTSQRKATVLLTSQTCSDTAAPAPST 424
           P   Q  AT + +S   S  AAP P+T
Sbjct: 12  PPAPQSAATPISSSGMTSPAAAPPPAT 38


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/41 (17%), Positives = 18/41 (43%)
 Frame = -1

Query: 432 VTIVDGAGAAVSEQVCEVSSTVALRCEVKGLKMEGGPSLLW 310
           V  V G  A  S + C ++  + +  ++  +  +    ++W
Sbjct: 194 VCFVPGVVAMFSRKPCSINENLKMGLDIASITAQASSFVVW 234


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/41 (17%), Positives = 18/41 (43%)
 Frame = -1

Query: 432 VTIVDGAGAAVSEQVCEVSSTVALRCEVKGLKMEGGPSLLW 310
           V  V G  A  S + C ++  + +  ++  +  +    ++W
Sbjct: 194 VCFVPGVVAMFSRKPCSINENLKMGLDIASITAQASSFVVW 234


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 282 HHLTSHLSGTIATRGHL 332
           HHL  H      TRG L
Sbjct: 367 HHLARHAVACFLTRGDL 383


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 91  LCKTLTFNDMQYDMC 135
           LC ++TF++  Y  C
Sbjct: 163 LCNSVTFSNFGYKQC 177


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 91  LCKTLTFNDMQYDMC 135
           LC ++TF++  Y  C
Sbjct: 396 LCNSVTFSNFGYKQC 410


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 91  LCKTLTFNDMQYDMC 135
           LC ++TF++  Y  C
Sbjct: 396 LCNSVTFSNFGYKQC 410


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,059
Number of Sequences: 336
Number of extensions: 1932
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)