Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F02
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.100
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    27   1.2  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   2.8  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   2.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.0  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   5.0  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   6.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    24   8.7  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    24   8.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.100
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 239 APNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSI-FKPLTSQRKATVLLTSQTCSDTAAPA 415
           +P   + L PP ++++F+K +    SNE   ++  KP  S  + T L+  Q  S    P+
Sbjct: 589 SPEKQKVLSPPPIITNFDKETLA--SNEAHEAVPQKP--SAPQVTRLMAPQDSSSVVTPS 644

Query: 416 PSTIV 430
           P++++
Sbjct: 645 PTSLL 649


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 227 LAPFAPNSVRTLMPPLVVSSFNKSSFRYHSNEGPP-SIFKPLTSQRKATVLLTSQ 388
           L+ F P   + L   +  S F KS       +GPP  IF P  +Q  +  L  +Q
Sbjct: 201 LSSFCPPGGKLLKVSIYPSEFGKSRMAAEHVQGPPRDIFTPADNQPSSAELHEAQ 255


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 245 NSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFK 343
           +S+     P V S  N S      NEGPPS FK
Sbjct: 3   SSINNSSQPTVPSISNNSHGDSFVNEGPPSNFK 35


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 341 KPLTSQRKATVLLTSQTCSDTAAPAPSTI 427
           KP  SQ+K T  LTS+ C  ++   P+ I
Sbjct: 390 KPAESQKKYTKRLTSEFCISSSLRHPNVI 418


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 129 HVPVMVLVAAPWPLYTCTDQRRQLARGPRGARN*HRLHR 245
           +VP ++ +   WPL   T +  +  + PR  ++  RLHR
Sbjct: 875 NVPAIITLEKTWPLSRETREPIKDPQNPRYIQHVKRLHR 913


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 257 TLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVL 376
           +++ P  VS   +SS   H+N GP  +F+  T  R +  L
Sbjct: 52  SVVQPRRVSRTLRSSESVHTNHGPERVFESPTPARTSISL 91


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 242 PNSVRTL--MPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQ 388
           PN + +L   P    S F KS+ R HS       F P+ +   A+ L TSQ
Sbjct: 367 PNLISSLGTSPSTFSSQFLKSTDRTHSFTSKLQSFNPVGTSLLASSLGTSQ 417


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 169 CTRVPTSVVSSHAGHAEHGTST 234
           C++ PTSV S+      H TST
Sbjct: 433 CSQYPTSVASTQLVQTSHFTST 454


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -2

Query: 224 PCSAWPA-CELTTLVGTRVQWPGRRHQHHYRHMSYC 120
           P   W   C L  L   ++ +PGR +    R+M  C
Sbjct: 340 PIDTWSVGCSLYELYTGQILFPGRTNNQMLRYMMEC 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,661
Number of Sequences: 5004
Number of extensions: 29531
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)