Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F02
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532...    30   0.92 
02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504           29   1.6  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    29   2.1  
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436...    29   2.1  
11_02_0043 - 7690506-7691726                                           27   4.9  
03_05_0722 + 27139790-27140035,27140176-27140217                       27   4.9  
08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890           27   8.6  
01_05_0810 - 25435193-25435323,25435434-25436360,25436459-254369...    27   8.6  

>05_05_0165 +
           22851863-22852566,22852811-22852964,22853112-22853261,
           22853769-22853930,22854070-22854242,22854330-22854396,
           22854556-22854722,22855216-22855374,22856187-22856276,
           22856392-22856483,22856587-22856681,22857328-22857405,
           22858364-22858459,22859132-22859206,22859290-22859381,
           22859462-22859624,22859734-22859794,22860016-22860116,
           22860567-22860614
          Length = 908

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 188 LVGTRVQWPGRRHQHHYRH 132
           ++G  + W GR H+HH+ H
Sbjct: 153 VLGAELDWDGRGHEHHHHH 171


>02_01_0280 + 1872874-1873000,1873100-1873183,1873258-1874504
          Length = 485

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 432 VTIVDGAGAAVSEQVCEVSSTVALRCEVKG-LKMEGGPSLLW 310
           VT   G G    +  C ++S  + RCE +G +++EG  S ++
Sbjct: 98  VTAAAGGGGGKRKPTCRMTSKRSERCEARGDIRVEGNASTIY 139


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 366 ALRCEVKGLKMEGGPSLLWYRKDDLLNDD 280
           AL   V  L+ EGG S +W RKD    DD
Sbjct: 311 ALSVSVYALEAEGGGSWVWVRKDGRSMDD 339


>01_06_1153 -
           34942608-34942975,34943082-34943330,34943516-34943625,
           34944698-34944771,34945237-34945306,34945848-34945947,
           34946045-34946120,34946572-34946646,34947067-34947156,
           34947238-34947354,34947457-34947567,34947649-34947788,
           34947962-34948043,34948224-34948303,34948938-34949046,
           34949295-34949417,34949972-34950044,34950338-34950489,
           34951029-34951127,34952258-34952383
          Length = 807

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +2

Query: 314 SNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPAPST 424
           S+ GP S      SQ  AT  +TS   S T A APST
Sbjct: 579 SDHGPVSSANASNSQISATSSVTSDNRSSTVAYAPST 615


>11_02_0043 - 7690506-7691726
          Length = 406

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 420 DGAGAAVSEQVCEVSSTVALRCEVKGLKMEGGPSLLWYRKDD 295
           DG GAA +E+   V++  A   +    K+E   S +W   DD
Sbjct: 345 DGGGAATTEEAAGVAAQEASHPQPFATKLETTISTVWVEFDD 386


>03_05_0722 + 27139790-27140035,27140176-27140217
          Length = 95

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 212 WPACELTTLVGTRVQWPGRRHQH 144
           WPA  L+ LVG+RV + G RH H
Sbjct: 63  WPANLLSGLVGSRV-YLGERHDH 84


>08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890
          Length = 468

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 275 LGGASVSARSSVQTVLVPCSAWPACELTTLV 183
           LGG ++S +    T+LVP   W A   T LV
Sbjct: 298 LGGGAISEKFVRSTLLVPRPIWMALTQTVLV 328


>01_05_0810 -
           25435193-25435323,25435434-25436360,25436459-25436987,
           25437089-25437190
          Length = 562

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 20  YSKRTHSVVMISLDAAHEFPL*CSSARLSPLMTCNM 127
           +S   H++ ++ +DA +  P   S+ +LSP  T N+
Sbjct: 238 FSIAGHNMTVVEIDATYTKPFAASTVQLSPGQTMNV 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,272,922
Number of Sequences: 37544
Number of extensions: 248269
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)