Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F02
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)                 32   0.23 
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.31 
SB_34312| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_7200| Best HMM Match : Tubulin-binding (HMM E-Value=5.1)            29   2.2  
SB_25847| Best HMM Match : Methuselah_N (HMM E-Value=0.48)             28   2.8  
SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)         28   2.8  
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)                    27   5.0  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_33343| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 236 FAPNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPA 415
           F+P   +  + P   S  ++SS R  SNEG  S  +PL    K   L+T+++   T   A
Sbjct: 486 FSPLKDKNTLSP-AQSQTSESSSRSKSNEGFRSAKRPLFQAEKPEPLVTTESIRKTLLLA 544

Query: 416 PST 424
           P T
Sbjct: 545 PDT 547


>SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)
          Length = 857

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 236 FAPNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPA 415
           F+P   +  + P   S  ++SS R  SNEG  S  +PL    K   L+T+++   T   A
Sbjct: 270 FSPLKDKNTLSP-AQSQTSESSSRSKSNEGFRSAKRPLFQAEKPEPLVTTESIRKTLLLA 328

Query: 416 PST 424
           P T
Sbjct: 329 PDT 331


>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 396 EQVCEVSSTVALRCEVKGLKMEGGPSLLWYRKDDLLNDDTTRGGISVRTEFGAN 235
           +QV + +STV L C+  G      P+  WYR + +L   T+  G  + T+  A+
Sbjct: 357 DQVVQDNSTVMLNCQATGFP---DPNYTWYRNNQVLTTLTSDNGSFIITKATAD 407


>SB_34312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
 Frame = -2

Query: 239 QTVLVPCSAWPACELTTLVGTRV---QWPGRRHQHHYRHMSYCMSLKVRVLQSCIKVETR 69
           Q V  P +      LTT++G      QW GRR Q+  R + Y   L V   Q     +TR
Sbjct: 10  QAVTHPSTNRALLSLTTVIGREPVLSQWYGRRRQNCVRSIYYITVLLVLRKQKVNAYQTR 69

Query: 68  ----VPHPS 54
               V HPS
Sbjct: 70  YSQAVTHPS 78


>SB_7200| Best HMM Match : Tubulin-binding (HMM E-Value=5.1)
          Length = 294

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 290 NKSSF-RYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPA 415
           +KSSF + +S  GP ++  P+  Q +    +T+  CSD   P+
Sbjct: 176 DKSSFSKVNSRRGPLTVTSPIRHQNEGYGNVTTAECSDNDKPS 218


>SB_25847| Best HMM Match : Methuselah_N (HMM E-Value=0.48)
          Length = 390

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 155 RHQHHYRHMSYCMS 114
           RHQHH R + YC+S
Sbjct: 208 RHQHHLRFLQYCIS 221


>SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)
          Length = 444

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 257 TLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQT 391
           T MP +++   +  +F  H N GP  +   +T+    T+LLTS T
Sbjct: 252 TYMPAMILVILSWCTFWIHRNAGPARVTLSITT-ILTTILLTSST 295


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 224 PCSAWPACELTTLVGTRVQWPGRRHQHHYRHMSYCMSL 111
           P SA P+  +T ++   +      H HHYRH  Y  SL
Sbjct: 275 PLSALPSLCITLIITVIMHRLHHHHHHHYRH--YASSL 310


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 290  NKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPAP 418
            N + FR     G  S+ KPL  + K   LL      DTA   P
Sbjct: 2597 NSNYFRIGQRSGVISVNKPLDYETKRRFLLVVSAIDDTAPSKP 2639


>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
          Length = 593

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 73  VSTLMQLCKTLTFNDMQY 126
           +S L+ LCK++TF D QY
Sbjct: 117 LSDLVSLCKSVTFQDFQY 134


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 239  APNSVRTLMPPLVVSSFNKSSFRYHSNEGPPSIFKPLTSQRKATVLLTSQTCSDTAAPAP 418
            AP S  TL P + ++S  +S+    +   P + F P T++   T L    T +  + PAP
Sbjct: 1882 APES--TLAPEITIAS--ESTVAPGTTMAPETTFTPETTKAPETTLPPETTMASESTPAP 1937

Query: 419  ST 424
             +
Sbjct: 1938 ES 1939


>SB_33343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 363 LRCEVKGLKMEGGPSLL 313
           + C VKG K+EGGP ++
Sbjct: 133 MECYVKGKKVEGGPQMI 149


>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 29  RTHSVVMISLDAAHEFPL*CSSARL 103
           RTHS +++S  + HEF   CS  R+
Sbjct: 150 RTHSGMIVSSSSNHEFVFPCSPLRI 174


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 326 PPSIFKPLTSQRKATVLLTSQTCSDTAAPAPST 424
           PP+   P T++   T   TS + + T APA +T
Sbjct: 786 PPTTAPPTTTKEPTTDASTSTSAATTTAPATTT 818


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,132
Number of Sequences: 59808
Number of extensions: 283228
Number of successful extensions: 723
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)