Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_F02
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 187 SVVSSHAGHAEHGTSTVCTELRADTDA 267
           +V+S H G   + T ++CT L    DA
Sbjct: 166 AVISMHDGLVLYTTPSICTALGYLKDA 192


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 187 SVVSSHAGHAEHGTSTVCTELRADTDA 267
           +V+S H G   + T ++CT L    DA
Sbjct: 161 AVISMHDGLVLYTTPSICTALGYLKDA 187


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 208 GHAEHGTSTVCTELR 252
           GH +HG +T+   LR
Sbjct: 152 GHVDHGKTTLLDALR 166


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 282 HHLTSHLSGTIATRGHL 332
           HHL  H      TRG L
Sbjct: 371 HHLARHAVACFLTRGDL 387


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 381 VSSTVALRCEVKGLKMEGGPS 319
           +SST  L   V+G+K+  G S
Sbjct: 406 ISSTATLGFRVEGIKLAHGGS 426


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 381 VSSTVALRCEVKGLKMEGGPS 319
           +SST  L   V+G+K+  G S
Sbjct: 321 ISSTATLGFRVEGIKLAHGGS 341


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 381 VSSTVALRCEVKGLKMEGGPS 319
           +SST  L   V+G+K+  G S
Sbjct: 640 ISSTATLGFRVEGIKLAHGGS 660


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 245  NSVRTLMPPLVVS 283
            +S+RTL+PP+ V+
Sbjct: 1847 SSLRTLLPPISVA 1859


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 245  NSVRTLMPPLVVS 283
            +S+RTL+PP+ V+
Sbjct: 1843 SSLRTLLPPISVA 1855


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,560
Number of Sequences: 438
Number of extensions: 2224
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)