Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E24
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    27   9.7  

>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
           protein F40F11.2b protein.
          Length = 1607

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 520 GNLNEFGRPMSRHRSIKQ*TLTGPNLHYEILHRF 419
           GNL +FG P+ RH S        PN H +  H +
Sbjct: 561 GNLQQFGEPLQRHGSYPHSHDMRPNSHSQSQHSY 594


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical
           protein F40F11.2a protein.
          Length = 1593

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 520 GNLNEFGRPMSRHRSIKQ*TLTGPNLHYEILHRF 419
           GNL +FG P+ RH S        PN H +  H +
Sbjct: 547 GNLQQFGEPLQRHGSYPHSHDMRPNSHSQSQHSY 580


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 195 HRGRRTSTVREPQEPHFRYRRSSIQQIPGLFCHQKFQSQSRNPQGRY 335
           HR R  S  +     + R R  S  + P     ++  S+SR+P+ RY
Sbjct: 3   HRSRSNSRSQSRSRENSRGRSRSASKSPVYHRRERESSRSRSPRARY 49


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 84  YIFRWCWWFRL-EGAGECLLRRDGNHFRQRCTSSRGPFHRGRRT 212
           Y   W  W R  E  G C     G  +R+RCTS+       ++T
Sbjct: 549 YSLLWSGWTRCSENCGSC-----GTQYRERCTSTTNCLRSAKQT 587


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,193
Number of Sequences: 27780
Number of extensions: 239884
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)