Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E23
(389 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-3|AAK21382.1| 73|Caenorhabditis elegans Ubiquitin-like ... 70 7e-13
AL110479-20|CAB54371.1| 338|Caenorhabditis elegans Hypothetical... 30 0.50
U97000-8|AAC47999.1| 347|Caenorhabditis elegans Seven tm recept... 27 3.6
Z83107-2|CAB05503.2| 356|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z83107-1|CAB05506.2| 461|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 26 8.2
U53339-4|AAA96200.1| 298|Caenorhabditis elegans Hypothetical pr... 26 8.2
>U88173-3|AAK21382.1| 73|Caenorhabditis elegans Ubiquitin-like
family protein 5 protein.
Length = 73
Score = 69.7 bits (163), Expect = 7e-13
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Frame = -2
Query: 226 MLEVTCNDRLGKKVRVKCNPDDXRG*FKEV---NSRTNWH*IRQNSTQEMVHSIXRIILN 56
M+E+T NDRLGKKVR+KCNP D G K++ + T W + + ++I + +
Sbjct: 1 MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRW----EKIVLKKWYTIYKDHIT 56
Query: 55 LRDYEIHDGMNLELYYQ 5
L DYEIH+G N ELYYQ
Sbjct: 57 LMDYEIHEGFNFELYYQ 73
Score = 55.6 bits (128), Expect = 1e-08
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3
Query: 156 VGDLKKLIAAQTGTRYDKIVLKKWYTV 76
+GDLKKLIAAQTGTR++KIVLKKWYT+
Sbjct: 24 IGDLKKLIAAQTGTRWEKIVLKKWYTI 50
>AL110479-20|CAB54371.1| 338|Caenorhabditis elegans Hypothetical
protein Y105C5B.23 protein.
Length = 338
Score = 30.3 bits (65), Expect = 0.50
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 47 VSQV*YDPXNTVYHFLSTILSYLVPVCAAINFF 145
+ Q+ Y P N YHFL T L LV I FF
Sbjct: 12 IGQIMYRPKNICYHFLVTSLLCLVLFVNVITFF 44
>U97000-8|AAC47999.1| 347|Caenorhabditis elegans Seven tm receptor
protein 136 protein.
Length = 347
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 205 HCMLLQAFCSQISSQF-Y*EIKYINSNFLFVLVILPPFKIFTAVLMVFITFF 357
HC+L S +S QF Y + ++ L L F IFT ++VFI +F
Sbjct: 99 HCVLTGFVASLLSCQFFYRYVALCKTHLLVYLQGKKLFLIFTPSVIVFIIWF 150
>Z83107-2|CAB05503.2| 356|Caenorhabditis elegans Hypothetical
protein F32A7.3b protein.
Length = 356
Score = 26.2 bits (55), Expect = 8.2
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = -2
Query: 277 YLYILFLNKTES*FESKML--EVTCNDRLGKKVRVKCNPDDXRG*FKEVNSRTNWH*IRQ 104
+L+++++ E F + + E+T + K+ DD R FK+VN +T W R
Sbjct: 143 HLHVVYVCVNEEIFSEEAIKGELTSLETYLKEADAMQKQDDERF-FKDVNDKTQWE--RV 199
Query: 103 NSTQEMVHSIXRIILNLRDYEIHDGMNLE 17
++ I N Y HD +E
Sbjct: 200 VDSEPAKDPDVHQIANDASYVTHDEYRME 228
>Z83107-1|CAB05506.2| 461|Caenorhabditis elegans Hypothetical
protein F32A7.3a protein.
Length = 461
Score = 26.2 bits (55), Expect = 8.2
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = -2
Query: 277 YLYILFLNKTES*FESKML--EVTCNDRLGKKVRVKCNPDDXRG*FKEVNSRTNWH*IRQ 104
+L+++++ E F + + E+T + K+ DD R FK+VN +T W R
Sbjct: 248 HLHVVYVCVNEEIFSEEAIKGELTSLETYLKEADAMQKQDDERF-FKDVNDKTQWE--RV 304
Query: 103 NSTQEMVHSIXRIILNLRDYEIHDGMNLE 17
++ I N Y HD +E
Sbjct: 305 VDSEPAKDPDVHQIANDASYVTHDEYRME 333
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 177 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 266
L RTF P RS H ++ N+L LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 177 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 266
L RTF P RS H ++ N+L LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 177 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 266
L RTF P RS H ++ N+L LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 177 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 266
L RTF P RS H ++ N+L LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719
>U53339-4|AAA96200.1| 298|Caenorhabditis elegans Hypothetical
protein F58A6.5 protein.
Length = 298
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 123 FVRLLTSLNHPRXSSGLHLTRTFLPSRSLHVTSSI 227
F L+ +++ P SSG ++++TF + L + +SI
Sbjct: 80 FGNLMMNMSPPEKSSGFNISKTFANATFLLIVASI 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,466,145
Number of Sequences: 27780
Number of extensions: 121692
Number of successful extensions: 378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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