Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E22
(385 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 89 1e-18
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 29 0.85
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 6.0
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 6.0
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 6.0
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 26 7.9
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 26 7.9
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 26 7.9
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 26 7.9
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 26 7.9
AL033514-35|CAE18033.1| 106|Caenorhabditis elegans Hypothetical... 26 7.9
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 26 7.9
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 88.6 bits (210), Expect = 1e-18
Identities = 54/119 (45%), Positives = 60/119 (50%)
Frame = -3
Query: 377 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 198
MPPKKD K P LNN VLFD+ TY+KLYKE
Sbjct: 1 MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57
Query: 197 VPQYKLITPAVVSERLKVRGXPGEKSTHRA*GKRSQSKQVVQHHGQVIYTRATKGDDPV 21
V YKLITP+VVSERLKVR + K K VV HHGQV+YTRATK D +
Sbjct: 58 VITYKLITPSVVSERLKVRASLAKAGLKELQAK-GLVKCVVHHHGQVVYTRATKEADVI 115
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 29.5 bits (63), Expect = 0.85
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 366 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 265
E REG G + + RIRW+ +EE+V R+
Sbjct: 25 EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 325 RRRRKDPVAAKPRRRSGP 272
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 325 RRRRKDPVAAKPRRRSGP 272
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = +2
Query: 194 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 313
GL + W YQ CS TC F W W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 251 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGXPGEKSTHRA*GKRSQ 90
L N +LF++P KLY+ V + + + S + R GEK + + G++ +
Sbjct: 693 LRNNILFNRPYDAKLYQNVIENCALVQDLESLPAEDRTEIGEKGINLSGGQKQR 746
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 251 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGXPGEKSTHRA*GKRSQ 90
L N +LF++P KLY+ V + + + S + R GEK + + G++ +
Sbjct: 693 LRNNILFNRPYDAKLYQNVIENCALVQDLESLPAEDRTEIGEKGINLSGGQKQR 746
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 251 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGXPGEKSTHRA*GKRSQ 90
L N +LF++P KLY+ V + + + S + R GEK + + G++ +
Sbjct: 693 LRNNILFNRPYDAKLYQNVIENCALVQDLESLPAEDRTEIGEKGINLSGGQKQR 746
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 251 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGXPGEKSTHRA*GKRSQ 90
L N +LF++P KLY+ V + + + S + R GEK + + G++ +
Sbjct: 693 LRNNILFNRPYDAKLYQNVIENCALVQDLESLPAEDRTEIGEKGINLSGGQKQR 746
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 251 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGXPGEKSTHRA*GKRSQ 90
L N +LF++P KLY+ V + + + S + R GEK + + G++ +
Sbjct: 693 LRNNILFNRPYDAKLYQNVIENCALVQDLESLPAEDRTEIGEKGINLSGGQKQR 746
>AL033514-35|CAE18033.1| 106|Caenorhabditis elegans Hypothetical
protein Y75B8A.37 protein.
Length = 106
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 323 SVFFEAVWPKPSR 361
S+FF A+WPKP R
Sbjct: 71 SLFFVAIWPKPVR 83
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 251 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGXPGEKSTHRA*GKRSQ 90
L N +LF++P KLY+ V + + + S + R GEK + + G++ +
Sbjct: 693 LRNNILFNRPYDAKLYQNVIENCALVQDLESLPAEDRTEIGEKGINLSGGQKQR 746
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,068,450
Number of Sequences: 27780
Number of extensions: 186015
Number of successful extensions: 550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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