Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E21
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.4  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   1.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.2  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   5.6  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    25   9.8  

>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 452 HMYTVAIFVFISVLVNFLLLKSCFLVINL 366
           H+  V+I++F+  L N  L  SC + + L
Sbjct: 56  HIRMVSIYIFLKALSNIFLASSCEITVRL 84


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 423 KNENCYSVHMSR--LLSKAAICAFGQKKFIEMSYQIDLNIIV 542
           + +  Y   +SR  L+ K+AI AFG   F+E SY +  N +V
Sbjct: 618 RKDELYVERVSRFALMVKSAIEAFGINTFVEASYLVSDNQLV 659



 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 83  KMHLNTINYSYQLSIWSS-LKCL 148
           K H+  ++Y    S+WS+ +KCL
Sbjct: 561 KQHIRGLSYEQSSSVWSTYIKCL 583


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 540  RLYSNQSDMTFQ*IFFVQMHRLPPLIIDDS 451
            + Y N +D + + I+ +Q ++ P LIID S
Sbjct: 3478 KYYKNLTDYSLENIYIIQENKSPLLIIDPS 3507


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 331 FTTIRFVDEFLILNKCKLGITSNRIDQSSVIFVLVYCLFLKY*NFNTM 188
           F T+   D +L L+KC   + +  +    VIFV V+     Y NF  M
Sbjct: 252 FITMDTSDIWLALSKCLNYVNTVIVYPIFVIFVFVWIYMRHYLNFKIM 299


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 124 HLVKPEVPLTEIFNSFLLRTSTWY*NSNILKTNNKLKQI*HCSDQFYWML 273
           H   P  P+ +  N FLL    W    N L   + L+ + H S QFY+ L
Sbjct: 30  HEEDPIQPVLKNSNLFLLNRDIWSLIINYLDAFDILRLM-HSSRQFYYWL 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,190
Number of Sequences: 5004
Number of extensions: 53555
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)