Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E20
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 195 5e-51
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 192 5e-50
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 29 0.58
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.2
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces... 26 7.2
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.5
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 195 bits (476), Expect = 5e-51
Identities = 101/213 (47%), Positives = 131/213 (61%), Gaps = 3/213 (1%)
Frame = -1
Query: 800 VIFFRXGVRSVQANGQKVMYDLESKINQAVFPGLQGGPHNHXXXXXXXXXXXXXXTEFVE 621
+IFFR G+R G + YDLE KIN +VFPG QGGPHNH + E
Sbjct: 252 MIFFRRGLRKHDKKGNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKE 311
Query: 620 YQKQVIKNAQRLCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNK 441
YQ QV+KNA+ E RGY +A GTD H+ LVD++ G+ GA AERVLEL ++ NK
Sbjct: 312 YQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNK 371
Query: 440 NTVPGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRALKIGLEIIK---VSGLKL 270
NTVP D SA +PSGIR+GTPA+TTRG KE D +VVD+IDRAL + K KL
Sbjct: 372 NTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKL 431
Query: 269 VDFNKAIEENAEFKKKIENLKEEVENYSKSFPL 171
DF + E ++ + ++ L++EV ++ SFPL
Sbjct: 432 KDFKAKLGEGEQYPELVQ-LQKEVAEWASSFPL 463
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 192 bits (468), Expect = 5e-50
Identities = 97/215 (45%), Positives = 129/215 (60%), Gaps = 4/215 (1%)
Frame = -1
Query: 800 VIFFRXGVRSVQANGQKVMYDLESKINQAVFPGLQGGPHNHXXXXXXXXXXXXXXTEFVE 621
+IF+R G RS G ++Y+LE KIN +VFPG QGGPHNH EF +
Sbjct: 258 MIFYRKGTRSHDKRGNPILYELEDKINFSVFPGHQGGPHNHTITALAVALGQAKTPEFYQ 317
Query: 620 YQKQVIKNAQRLCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNK 441
YQK V+ NA+ + I+RGY + +GGTD HL LVDL G+ GA ER+LEL +++ NK
Sbjct: 318 YQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANK 377
Query: 440 NTVPGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRAL----KIGLEIIKVSGLK 273
NTVPGD SAL P G+RLGTPA TTRG E D ++VV+ ID + KI +K K
Sbjct: 378 NTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSK 437
Query: 272 LVDFNKAIEENAEFKKKIENLKEEVENYSKSFPLP 168
DF + + ++F +I LK+EV ++ F P
Sbjct: 438 FRDFKAYVGDGSKF-SEIAKLKKEVITWAGKFDFP 471
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 29.5 bits (63), Expect = 0.58
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -1
Query: 344 DKVVDFIDRALKIG-LEIIKVSGLKLV---DFNKAIEENAEFKKKIENLKEEVENYSKSF 177
D + DF D K+G E S L+ +F+K +++ E K ++LKEE+ NY S
Sbjct: 228 DIIKDFTDSPSKVGGNEEFDYSTGDLITKKEFDKILQQKVEQLK--QSLKEEMSNYKSSV 285
Query: 176 P 174
P
Sbjct: 286 P 286
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 151 KINLDKFNIKSK*LHLYHIFYMKILFSAMQFIY 53
K N + I + +HLYH ++ + S+ ++Y
Sbjct: 22 KANFESIRINLQHMHLYHYEHIHLFTSSQSYMY 54
>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = -1
Query: 632 EFVEYQKQVIKNAQRLC-----EGLISRGYSIATGGTDVHLALVDL 510
E +E Q++V+KN QRL EGL ++ DVH +VDL
Sbjct: 152 EKIEMQEKVLKNFQRLQKEFREEGLEFITLDASSSLEDVHSQIVDL 197
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -1
Query: 272 LVDFNKAIEENA-EFKKKIENLKEEVENYSKS 180
L N +I++ E+++K+E LK+E+E Y+K+
Sbjct: 110 LESLNNSIKQKQDEYQRKLEELKKEIE-YAKT 140
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 248 EENAEFKKKIENLKEEVENYSK 183
+E FK+++ +L EEVEN K
Sbjct: 1380 KETDTFKQQVNSLNEEVENLKK 1401
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,899
Number of Sequences: 5004
Number of extensions: 46658
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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