Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E20
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 199 2e-51
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 182 3e-46
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 182 4e-46
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 163 1e-40
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 147 8e-36
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 30 2.5
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 29 4.3
08_02_0959 - 23055078-23055177,23055408-23055985 29 5.7
08_02_0960 + 23058393-23059739 28 9.9
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780... 28 9.9
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 199 bits (485), Expect = 2e-51
Identities = 96/216 (44%), Positives = 133/216 (61%), Gaps = 1/216 (0%)
Frame = -1
Query: 800 VIFFRXGVRSVQANGQKVMYDLESKINQAVFPGLQGGPHNHXXXXXXXXXXXXXXTEFVE 621
+IF+R GV+ V G++VMYD E KIN AVFPGLQGGPHNH E+
Sbjct: 278 MIFYRKGVKGVNKQGKEVMYDFEDKINAAVFPGLQGGPHNHTITGLAVALKQATTPEYRA 337
Query: 620 YQKQVIKNAQRLCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACNK 441
YQ+QV+ N + + L ++GY + +GGTD HL LV+L+ G+ G+ E+VLE +A NK
Sbjct: 338 YQEQVMSNCAKFAQSLTAKGYELVSGGTDNHLVLVNLKSKGIDGSRVEKVLENVHIAANK 397
Query: 440 NTVPGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRALKIGLEI-IKVSGLKLVD 264
NTVPGD+SA+ GTPALT+RG E D KV DF D A+ + L++ G KL D
Sbjct: 398 NTVPGDVSAMLHD--HAGTPALTSRGFVEEDFAKVADFFDAAVNLALKVKAAAGGTKLKD 455
Query: 263 FNKAIEENAEFKKKIENLKEEVENYSKSFPLPGFDK 156
F ++ ++ + +I L+ +VE Y+K FP GF+K
Sbjct: 456 FVATLQSDSNIQSEIAKLRHDVEEYAKQFPTIGFEK 491
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 182 bits (443), Expect = 3e-46
Identities = 97/214 (45%), Positives = 130/214 (60%), Gaps = 1/214 (0%)
Frame = -1
Query: 800 VIFFRXGVRSVQ-ANGQKVMYDLESKINQAVFPGLQGGPHNHXXXXXXXXXXXXXXTEFV 624
+IF+R G + + + +YD E KIN AVFP LQGGPHNH F
Sbjct: 253 MIFYRKGPKPPKKGQPEGAVYDYEDKINFAVFPSLQGGPHNHQIAALAVALQQTMTPGFK 312
Query: 623 EYQKQVIKNAQRLCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACN 444
Y KQV NA + + L+S+GY + T GT+ HL L DLR +GL G E++ +LCS+ N
Sbjct: 313 AYAKQVKANAVAIGKYLMSKGYKMVTDGTENHLVLWDLRPLGLTGNKVEKMCDLCSITLN 372
Query: 443 KNTVPGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRALKIGLEIIKVSGLKLVD 264
KN V GD SAL P G+R+GTPA+T+RGL E D +++ +F+ +A+ I L I K G L D
Sbjct: 373 KNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLLKD 432
Query: 263 FNKAIEENAEFKKKIENLKEEVENYSKSFPLPGF 162
F+K + N K IENLK EVE ++ SF +PGF
Sbjct: 433 FSKGLVNN----KDIENLKLEVEKFATSFDMPGF 462
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 182 bits (442), Expect = 4e-46
Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = -1
Query: 800 VIFFRXGVRSVQ-ANGQKVMYDLESKINQAVFPGLQGGPHNHXXXXXXXXXXXXXXTEFV 624
+IF+R G++ + + +YD E +IN AVFP LQGGPHNH F
Sbjct: 206 MIFYRKGLKPPKKGQPEGALYDYEDRINFAVFPSLQGGPHNHQIAALAVGLKQTMSPGFK 265
Query: 623 EYQKQVIKNAQRLCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCSVACN 444
Y KQV NA L L+S+GY + T GT+ HL L DLR +GL G E+V +LCS+ N
Sbjct: 266 SYIKQVKANAVALGNHLMSKGYKLVTDGTENHLVLWDLRPLGLTGNKVEKVCDLCSITLN 325
Query: 443 KNTVPGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRALKIGLEIIKVSGLKLVD 264
KN V GD SA++P G+R+GTPA+T+RGL E D ++ +F+ +A+ I L++ K G L
Sbjct: 326 KNAVFGDSSAMSPGGVRIGTPAMTSRGLVEEDFVQIAEFLHQAVTICLDVQKERGKLLKY 385
Query: 263 FNKAIEENAEFKKKIENLKEEVENYSKSFPLPGF 162
FN+ +E N K IE+L+ EVE ++ SF +PGF
Sbjct: 386 FNEGLENN----KDIEDLRAEVEKFATSFEMPGF 415
>01_06_1521 + 37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 163 bits (397), Expect = 1e-40
Identities = 87/219 (39%), Positives = 121/219 (55%), Gaps = 5/219 (2%)
Frame = -1
Query: 800 VIFFRXGVRSVQANGQKVM-----YDLESKINQAVFPGLQGGPHNHXXXXXXXXXXXXXX 636
+IFFR G + G YD E +IN AVFP +QGGPHN+
Sbjct: 385 IIFFRRGKNLRRRTGSFSQADENDYDFEDRINFAVFPSMQGGPHNNHIAALAITLKQVAT 444
Query: 635 TEFVEYQKQVIKNAQRLCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELCS 456
E+ Y QV KNAQ L L+ R + TGGTD HL L DLR +GL G E+V E C
Sbjct: 445 PEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVCEACH 504
Query: 455 VACNKNTVPGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRALKIGLEIIKVSGL 276
++ NK + GD +++P G+R+GTPA+TTRG E D + + DF+ RA +I ++K G
Sbjct: 505 ISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADFLIRATQIASNLMKEHGK 564
Query: 275 KLVDFNKAIEENAEFKKKIENLKEEVENYSKSFPLPGFD 159
+F + ++ N K I L+ +VEN++ F +PGFD
Sbjct: 565 MQKEFLRGLQNN----KDIIELRNQVENFASQFAMPGFD 599
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 147 bits (357), Expect = 8e-36
Identities = 87/220 (39%), Positives = 118/220 (53%), Gaps = 6/220 (2%)
Frame = -1
Query: 800 VIFFRXG------VRSVQANGQKVMYDLESKINQAVFPGLQGGPHNHXXXXXXXXXXXXX 639
+IFFR G V S+ + YD E +IN AVFP +QGGPHN+
Sbjct: 355 IIFFRKGKNLRKRVGSLTQVVENDQYDFEDRINFAVFPSMQGGPHNNHIAALAIALKQVA 414
Query: 638 XTEFVEYQKQVIKNAQRLCEGLISRGYSIATGGTDVHLALVDLRGVGLRGAPAERVLELC 459
EF Y +QV KNAQ L L+ R + TGGTD HL L DLR GL G E+V E C
Sbjct: 415 MPEFKAYIQQVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTGKNFEKVCEAC 474
Query: 458 SVACNKNTVPGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRALKIGLEIIKVSG 279
++ NK + GD +++P GTPA+TTRG E+D + + +F+ RA I ++K G
Sbjct: 475 HISLNKTPIYGDNGSISPG----GTPAMTTRGCLESDFEIMAEFLLRAAHIASIVLKEHG 530
Query: 278 LKLVDFNKAIEENAEFKKKIENLKEEVENYSKSFPLPGFD 159
DF K +E N + I L+ +VE ++ F +PGFD
Sbjct: 531 RLQKDFLKGLENNND----IIELRNQVETFALQFAMPGFD 566
>12_01_0991 -
10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 383 PALTTRGLKEADIDKVVDFIDRALKIGLEIIKVSG 279
PAL LK+ + K V F+ R+ GLE++ +SG
Sbjct: 501 PALKVLYLKQCGLRKTVPFLRRSNITGLEVLDISG 535
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 253 ALLKSTSFSPETLMISRPIFNALSIKSTTLSI-SASLRPLVVNAGVPSLMPL 405
A L+ FSP LM+ + + KS++ SI S+ P V ++ VPS M +
Sbjct: 256 ARLREQDFSPSKLMVLKRVLEK-HFKSSSFSIGSSGATPQVSDSSVPSSMKI 306
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 268 TSF-SPETLMISRPIFNALS-IKSTTLSISASLRPLVVNAGVPSLMPLGLSAL 420
TSF SPE ++ +F L+ +++ + PLVVNA +PSL + L +
Sbjct: 25 TSFLSPEPSRLNFGVFATLNGTNASSSGLPVQSTPLVVNAALPSLYFMSLKGI 77
>08_02_0960 + 23058393-23059739
Length = 448
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 268 TSF-SPETLMISRPIFNALSIKSTTLSIS-ASLRPLVVNAGVPSLMPLGLSAL 420
TSF SPE ++ +F L+ + + S S PLVVNA +PSL + L +
Sbjct: 244 TSFLSPEPSRLNFGVFATLNGTNASSSGSPVQSTPLVVNAALPSLYFMSLKGI 296
>01_06_0157 +
27075179-27075529,27075849-27076043,27077705-27078036,
27078157-27078577
Length = 432
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 431 PGDISALNPSGIRLGTPALTTRGLKEADIDKVVDFIDRAL 312
P I+A+NPSG +LGT + + D V + D+ L
Sbjct: 255 PSRIAAVNPSGYQLGTDFIANNQVPGIDFATVHSYPDQWL 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,468
Number of Sequences: 37544
Number of extensions: 305723
Number of successful extensions: 1014
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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