Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E19
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    39   9e-04
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    32   0.10 
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    28   1.6  
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    26   6.6  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   8.7  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   8.7  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.7  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = -3

Query: 613 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGY 434
           L  +D  L   +Y AG   T AD  +   + + +   +  K Y N+KRW   V S  P  
Sbjct: 148 LDYIDNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV-SDRPAC 206

Query: 433 QEANEK 416
           + A EK
Sbjct: 207 RIAAEK 212


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = -3

Query: 640 AKNEKVQEALQLLDKFLEGQ----KYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVK 473
           A+  K+ +AL+   ++ E Q    KY   P L    LS  A+  S+  S        + +
Sbjct: 116 AEKRKILDALKSRKEYFETQALLEKYGEQPTLAQKKLSNAAAAKSVPGSSSSSSDPMHPQ 175

Query: 472 RWYETVKSTAPGYQEANEKGLEA 404
            WY+ V     G  E +E   EA
Sbjct: 176 HWYDRVLEGLVGANENSENNREA 198


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -2

Query: 398 RDLSIACLKSE-HLSTRNENLFKITSLELNLTN*AELKRHCL 276
           + +S+ CL S+ +L   ++ +FK  ++ELN  N  ++KR+ L
Sbjct: 64  KHVSLYCLLSDRYLQPPSKRIFKRWNMELNNLNCPDIKRYIL 105


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 676 YPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLE 512
           Y Q    +   + +NE ++  L +L+  L+ + Y+     T+ADLS I+  + LE
Sbjct: 124 YHQELVISAITRYRNE-IKRVLGVLEDILKDRDYLVANRFTIADLSFISWNNFLE 177


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 685 DYFYPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLI 533
           ++F+ +    A   + +NE ++  L +L+  L+ + Y+     T+ADLS I
Sbjct: 122 NFFHHEPVVSA-VTRYRNE-IKRVLGVLEDILKDRDYLVANKYTIADLSFI 170


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 598 KFLEGQKYVAGPNLTVADLSLIASVSSLEASDI 500
           +F   Q+Y+    +   DL ++A   SLEA DI
Sbjct: 459 EFQSTQRYLVLSEIGETDLDILAEPKSLEACDI 491


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 617 SPSAAGQVPRRSEVRGRTEPHRRRPES 537
           +PSAA +VP++   + + +P  RR  S
Sbjct: 115 TPSAASEVPKKKYKKIKVDPSARRTSS 141


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 130  KWVSHDKKRNVSIKCEQIILNLLIYFQAKG 219
            +W+   KK+ +  +CE +IL++L + +  G
Sbjct: 1158 EWILITKKKVILEQCEYVILDILNFLKFSG 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,904
Number of Sequences: 5004
Number of extensions: 52428
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)