Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E18
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         33   0.029
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    29   0.83 
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    28   1.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   5.8  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    26   5.8  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    26   5.8  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   5.8  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   7.7  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 264 KKWDTCAPEAILSAAGGKLTDILGNFYKYGANVTKPNKTGVLAA 133
           K WD      ++  AGG ++D+ G    +G   T  N  GV+AA
Sbjct: 283 KIWDHAGGSLLVEEAGGVVSDMFGKPLDFGVGRTLKNNNGVIAA 326


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 450 TPAPPPESIVITTTRSHSNPVVEEALK 370
           TP PPP  + + +T   S P  EE +K
Sbjct: 318 TPLPPPPPVAVNSTNDESAPQNEELVK 344


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 252 TCAPEAILSAAGGKLTDILGNFYKYGANVTKPNKTGVLAAVNNELHSYALERIPEKLQ 79
           +C P A+L+   G + DI+      G      NKT  LAA   + H +A ER  +++Q
Sbjct: 197 SCFPAAVLAGLTGHVGDIIDGCAAPG------NKTTHLAACFPKSHIFAFERDAKRVQ 248


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
 Frame = -3

Query: 576  IAVNETPVAGVIHQP---YYKNIVEGDKKIGRTIWGL-HGVGVGGFTPAPPPESIVITTT 409
            + ++  P+AG +H P       + + +K I        H V VGG TP   P        
Sbjct: 812  VLLSNHPIAGGVHLPDLTVVTPVFDNNKDIIFYCAARGHMVDVGGITPGSMP-------- 863

Query: 408  RSHSNPVVEEALKVMNASKVLRVGGAGYKVL-QLLEGNASIYVFASPGCKKWDTCAP-EA 235
             S+S  + EE   +    KV++ G    K L QLL    + Y   S      D  +  +A
Sbjct: 864  -SNSKAIYEEGAAI-KTFKVVKAGTFDEKGLTQLLFDEPAKYPDCSGSRTLRDNISDVKA 921

Query: 234  ILSAAGGKLTDILGNFYKYGANVTKPNKTGVLAA 133
            +LSA     + +     +YG ++ + +  G+ AA
Sbjct: 922  MLSACHRGRSMVEKLVVEYGLDIVQRSMYGIQAA 955


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 198 LGNFYKYGANVTKPNKTGVLAAVNNE 121
           L +F++   N+T  N++ +LA +NN+
Sbjct: 396 LDDFFQLEDNITGLNRSAILACINNK 421


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 466 GCRWIYPGSSS*IHRNYNY*KPFESCCGGGTKSYECFKGA*GWWSWLQGPAIIRRKCINI 287
           G  W   G S  +  N +  KP+E C     +++E  +GA G  + L  PA+     I  
Sbjct: 412 GFDWREAGCSMCLGMNPDQLKPYERCASTSNRNFEGRQGAKG-RTHLVSPAMAAAAAIKG 470

Query: 286 CFC 278
             C
Sbjct: 471 HLC 473


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 376 CLLHNRIRMASSSCNYDGFRRRSRGKSTYTHTMQSPNCPTDFLVTFNYIFIVWLMDDTSN 555
           CLL  R     +S   D   ++ R K      + + + P D     NY+F V L    ++
Sbjct: 297 CLLVARQTDVENSIRLDFISKKLR-KRLNGDVVHNLDVPHDKSYKSNYLFSVVLSPHQAS 355

Query: 556 WCLIHSYTN 582
           W + +S+ N
Sbjct: 356 WNIYNSFDN 364


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 198 LGNFYKYGANVTKPNKTGVLAAVNNE 121
           L   Y YGA V  P K+G+L    N+
Sbjct: 211 LQQIYGYGATVWSPLKSGILTGKYND 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,987
Number of Sequences: 5004
Number of extensions: 66083
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)