Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E17
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 77 2e-15
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 31 0.20
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 30 0.35
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 29 0.61
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 1.9
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.5
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 27 2.5
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 27 3.3
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 4.3
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 7.6
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 10.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 10.0
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 77.0 bits (181), Expect = 2e-15
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Frame = -3
Query: 486 LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYQSRKRGMLENDL 319
L N+ + S+ N M E D+++ + E R A RL YQSRKRG+LE DL
Sbjct: 7 LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66
Query: 318 LLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF-DNEIMNLLKKH 142
LLS FAK ++ + YD+L++ P DWDI YW ++ P+++ +++ L K+
Sbjct: 67 LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124
Query: 141 AKNEDKIALRQPXL 100
+++ LR P L
Sbjct: 125 CRSQRNHTLRMPEL 138
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 477 VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPL-EKRKARLHYQSRKRGMLENDLLLSTFA 301
+Q + F + NN+DTT ++ L D+ K+ + H+ + + G ++ L+ + F
Sbjct: 654 LQAIIFDFSAVNNLDTTAVQ-SLIDIRKELEIYANETVEFHFTNIRSGWIKRTLVAAGFG 712
Query: 300 K 298
K
Sbjct: 713 K 713
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 29.9 bits (64), Expect = 0.35
Identities = 31/139 (22%), Positives = 53/139 (38%)
Frame = -3
Query: 516 TRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 337
TR L+ LK+++ + + MD ++ + + LEKRKA LH Q K
Sbjct: 7 TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63
Query: 336 MLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMN 157
LL + L + Q Y L NS +D+ + P + +
Sbjct: 64 QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS-RHDFKELVLHTNQLYEPVKRSQNFLT 120
Query: 156 LLKKHAKNEDKIALRQPXL 100
+ +H ++ + QP L
Sbjct: 121 SISEHYRDAKLMHQVQPQL 139
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/76 (23%), Positives = 40/76 (52%)
Frame = -3
Query: 354 QSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF 175
+ + ++ +++ F K++ F K+ + + I S +++ +IF W +++ +E
Sbjct: 191 RKQMESLVPSEVSYDDFWKRF---FWHKEVVQPIKAIQSGNDEEEIFSW-GDERSDEEES 246
Query: 174 DNEIMNLLKKHAKNED 127
DNE +N KK + ED
Sbjct: 247 DNEQVNDEKKQSSEED 262
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -3
Query: 591 ETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNM 436
ET+ +K++ LSK+ K+++++IKM NL + N+ K S T +++
Sbjct: 33 ETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH---PNIVKYRGSYQTNDSL 81
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -3
Query: 579 LKRLSLSKIDKNNMNLIK----MLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIP 412
L+ L + ++D N + +K M+H R L +S NA+ ++ F T MD P
Sbjct: 756 LQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRP 815
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 597 DFETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVA--FSSNTTNNMDTTY 424
DF +++ + ++ S++ N+ L K + + N +KNV A S N+D Y
Sbjct: 320 DFSSVIFQPMAKSEVKIKNILLSKYAYLAQNPVGNNKVKNVDSSAGLDESMADLNLDEEY 379
Query: 423 MEIPLYDV 400
+ L+ V
Sbjct: 380 LPFVLFTV 387
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 513 RTLNLSYNALKNVQKVAFSSNTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYQSRKR 340
R+L +YN + SS++T N + ++P E+++ KRK + +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.3
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = -3
Query: 474 QKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG--MLENDL-LLSTF 304
+KV FSS+ N D+TY K Q L K A L Q K+ +L DL L
Sbjct: 42 EKVKFSSSRFYNKDSTY--------SKDQGLAKESAALELQKLKQENVLLRKDLNNLEQI 93
Query: 303 AKKYLNGFNE--KQTMMYDRLINSPSN 229
+ Y G ++ K Y +N N
Sbjct: 94 SDCYAKGMDDIMKHVATYTATMNERMN 120
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 106 GLSECNFIFIFSMFFEKIHNFIVK 177
GLS NF+ FS FFE I +F++K
Sbjct: 289 GLS--NFVNSFSSFFELISHFLIK 310
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 576 KRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYME 418
K L+L +I++ M++IK + L+Y+ K V+K Y+E
Sbjct: 460 KGLTLEEINELYMSVIKPWESGNFKLNYSEQKKVEKEKSRKGGARGESVEYVE 512
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 189 TPKEFDNEIMNLLKKHAKNEDKIALRQPXLQLK 91
TP+E D + ++K +K ED+ LRQ L+ K
Sbjct: 123 TPEELDYQ--QIMKSLSKQEDQSPLRQDELERK 153
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 10.0
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 2/131 (1%)
Frame = -3
Query: 600 FDFETILLK-RLSLSKIDKNNMNLIKML-HTRTLNLSYNALKNVQKVAFSSNTTNNMDTT 427
++F L+ + +SKI + +LI+ H+ + + Y + + T N T
Sbjct: 24 YEFNKFFLRYKTEISKIQRRTSSLIQYEEHSSAIFIYYETPQMFDLATKALQTLYNSHTR 83
Query: 426 YMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRL 247
E K R R + S++ ++ + KKYL + + + L
Sbjct: 84 EGET------KAASKWYRNPRKDFPSQEAALVRKKKRDALILKKYLLNVDPSLSFRAEGL 137
Query: 246 INSPSNDWDIF 214
PS+D D++
Sbjct: 138 FTLPSDDLDVY 148
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 408 YDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKY 292
Y+V KQQ + + + ++KRG+ N+ L AKKY
Sbjct: 783 YNVAKQQRAYEEEINRIWNAQKRGLSINN--LEELAKKY 819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,911
Number of Sequences: 5004
Number of extensions: 58989
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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