Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E17
(674 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002331-1|AAH02331.1| 166|Homo sapiens chromosome 11 open read... 128 2e-29
AK000494-1|BAA91204.1| 166|Homo sapiens protein ( Homo sapiens ... 128 2e-29
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 3.7
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 3.7
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 3.7
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 3.7
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 3.7
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 3.7
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 3.7
BC117445-1|AAI17446.1| 546|Homo sapiens LOC129881 protein protein. 31 4.9
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated... 30 6.5
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ... 30 6.5
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 30 8.6
>BC002331-1|AAH02331.1| 166|Homo sapiens chromosome 11 open reading
frame 79 protein.
Length = 166
Score = 128 bits (309), Expect = 2e-29
Identities = 61/121 (50%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Frame = -3
Query: 456 SNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFN 277
S T + D + +P + + +E ++ARL Y+SRKRGMLEN +LLS FAK++L
Sbjct: 39 SPTDSQKDMIEIPLPPWQERTDESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMT 98
Query: 276 EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDK-IALRQPXL 100
EKQ +YDRLIN PSNDWDI+YW E KP P+ F+NE+M LL+ AKN++K LR P L
Sbjct: 99 EKQLNLYDRLINEPSNDWDIYYWATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDL 158
Query: 99 Q 97
+
Sbjct: 159 E 159
>AK000494-1|BAA91204.1| 166|Homo sapiens protein ( Homo sapiens
cDNA FLJ20487 fis, clone KAT08245. ).
Length = 166
Score = 128 bits (309), Expect = 2e-29
Identities = 61/121 (50%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Frame = -3
Query: 456 SNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFN 277
S T + D + +P + + +E ++ARL Y+SRKRGMLEN +LLS FAK++L
Sbjct: 39 SPTDSQKDMIEIPLPPWQERTDESIETKRARLLYESRKRGMLENCILLSLFAKEHLQHMT 98
Query: 276 EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDK-IALRQPXL 100
EKQ +YDRLIN PSNDWDI+YW E KP P+ F+NE+M LL+ AKN++K LR P L
Sbjct: 99 EKQLNLYDRLINEPSNDWDIYYWATEAKPAPEIFENEVMALLRDFAKNKNKEQRLRAPDL 158
Query: 99 Q 97
+
Sbjct: 159 E 159
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.7
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = -3
Query: 558 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 379
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 378 KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 199
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 198 KKPTPKEFDN---EIMNLLKKHAKNEDKI 121
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.7
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = -3
Query: 558 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 379
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 378 KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 199
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 198 KKPTPKEFDN---EIMNLLKKHAKNEDKI 121
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 3.7
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = -3
Query: 558 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 379
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 378 KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 199
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 198 KKPTPKEFDN---EIMNLLKKHAKNEDKI 121
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 3.7
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = -3
Query: 558 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 379
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 378 KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 199
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 198 KKPTPKEFDN---EIMNLLKKHAKNEDKI 121
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.7
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = -3
Query: 558 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 379
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 378 KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 199
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 198 KKPTPKEFDN---EIMNLLKKHAKNEDKI 121
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 3.7
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = -3
Query: 558 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 379
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 378 KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 199
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 198 KKPTPKEFDN---EIMNLLKKHAKNEDKI 121
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex protein
2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 3.7
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = -3
Query: 558 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 379
KIDK + + K + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCKKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 378 KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 199
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 198 KKPTPKEFDN---EIMNLLKKHAKNEDKI 121
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
>BC117445-1|AAI17446.1| 546|Homo sapiens LOC129881 protein protein.
Length = 546
Score = 30.7 bits (66), Expect = 4.9
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Frame = -3
Query: 411 LYDVEKQQPLEKRKARLHYQSRKRGM--LENDLLLSTFAKKYLNGFNEKQTMMY---DRL 247
LY++E ++ LEK++ +H +SR+R + +++ ++ ++ +EK RL
Sbjct: 243 LYEIEMRKKLEKKREEMH-ESRRRFLEHMQDKHIIKAVEQQQQEEEDEKMRKFIKAKKRL 301
Query: 246 INSPSNDWDIFYWIVEKKPTPKEFDNEIMNLLKKHAKNEDKIALR 112
I + ++EK+ + N + LLK+ NED I R
Sbjct: 302 IQMGKEKEAETHRLMEKR--RERIHNFLSELLKEKLDNEDMIIAR 344
>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
protein protein.
Length = 5005
Score = 30.3 bits (65), Expect = 6.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 342 RGMLENDLLLSTFAKKYLNGFN-EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNE 166
+G LEN ++ + +Y+ N E +M + + SND DI+Y++ E P+E +
Sbjct: 251 KGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEEN 310
Query: 165 I 163
I
Sbjct: 311 I 311
>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens
cDNA FLJ42912 fis, clone BRHIP3024533. ).
Length = 1168
Score = 30.3 bits (65), Expect = 6.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 342 RGMLENDLLLSTFAKKYLNGFN-EKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNE 166
+G LEN ++ + +Y+ N E +M + + SND DI+Y++ E P+E +
Sbjct: 5 KGKLENVRVMLVPSPRYVGLQNDEPPRLMGEGFVVMQSNDVDIYYYMDEPGLVPEETEEN 64
Query: 165 I 163
I
Sbjct: 65 I 65
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 29.9 bits (64), Expect = 8.6
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = -3
Query: 558 KIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLE 379
KIDK + + + + + + Y+ KN + A S+ +TT+ + L + +E
Sbjct: 681 KIDKAEVEVCRKHNQQQNHPKYSGQKNTEN-AKQSDWPVESETTFKSVLL-----NKTIE 734
Query: 378 KRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVE 199
+ L Y RK+ +L D+ +T K N + ++ + S N WD +
Sbjct: 735 ES---LIY--RKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMR 789
Query: 198 KKPTPKEFDN---EIMNLLKKHAKNEDKI 121
+K KEF N +++ + K K +D I
Sbjct: 790 EKSKGKEFTNVAESLISQINKRYKTKDDI 818
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,803,344
Number of Sequences: 237096
Number of extensions: 1788570
Number of successful extensions: 7099
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7099
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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