Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E16
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    55   1e-08
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   2.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    25   8.0  
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    25   8.0  

>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
 Frame = -3

Query: 492 EQAAKHLRHYTPLLAAFAQSARAELALLTKVQEYCYENMSFMRAFSKLVVMLYKTSVLSE 313
           E  AK +  + PLLA    S   ++  +  +Q+YC   +S  R F +L+   Y+  +  E
Sbjct: 574 EALAKVMTRWGPLLAKLTFSHEEQVDNVLTLQKYCV-RLSMTRHFLQLLGYFYQLEIAEE 632

Query: 312 EVILKWYKDTSSSKGKVMFLDQM--KKFVDWL 223
             I +WY D  SS+G++  L     K+FVDWL
Sbjct: 633 NAIQEWYSDPRSSEGELAALRDAGGKQFVDWL 664


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -3

Query: 621 RDVITDLREMAQRHHIPDHDVVTIVWQCVMSRGEWNKKEE--LIAEQAAKHLRHYTPLLA 448
           +DV+  L +++Q   +P+ DV   V   ++S   +N+K+   ++ +     +  YTP   
Sbjct: 605 KDVLIVLCQLSQNFILPNVDVARHVLLFILSFSPFNRKKSKTILNDTLPTSIPSYTPATH 664

Query: 447 AFAQSA-RAELALLTK 403
            +A  A  A   LL K
Sbjct: 665 PYAGPAINAYAKLLAK 680


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 257  NMTLPLEELVSLYHLRITSSERTLVLYSITTSLL 358
            N+ L ++EL++L   +ITS  ++L + S+  SL+
Sbjct: 957  NIALVVDELINLSSKQITSHPQSLSIASLEASLI 990


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 22/75 (29%), Positives = 29/75 (38%)
 Frame = -3

Query: 474 LRHYTPLLAAFAQSARAELALLTKVQEYCYENMSFMRAFSKLVVMLYKTSVLSEEVILKW 295
           ++ Y PL          ELA+L K  +Y   N SF   F       Y  S       +K 
Sbjct: 108 IQPYDPLSRETVYMRWKELAMLDKTVDYQNHNQSF--PFGISYEGFYYISFSQSTGKIKG 165

Query: 294 YKDTSSSKGKVMFLD 250
           Y    S   KV+FL+
Sbjct: 166 YYYHHSEPEKVLFLE 180


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 5/16 (31%), Positives = 14/16 (87%)
 Frame = -3

Query: 576 IPDHDVVTIVWQCVMS 529
           +P+HD++ +++ CV++
Sbjct: 92  VPNHDIIQVIFDCVLA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,886
Number of Sequences: 5004
Number of extensions: 27244
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)