Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E16
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 101 6e-22
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 57 2e-08
09_02_0462 + 9583558-9584910 38 0.006
07_03_0898 - 22403337-22404950 33 0.29
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 31 1.2
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 30 2.1
01_05_0268 - 20251413-20251565,20252420-20252674,20252905-202530... 29 2.7
08_02_1448 - 27168389-27172021 28 6.3
07_03_1302 + 25618621-25620495 28 6.3
03_01_0151 + 1206555-1206998,1207112-1207543 28 6.3
01_01_0620 - 4621291-4621379,4621722-4621803,4622238-4622282,462... 28 6.3
11_06_0309 + 22265906-22266929,22267451-22267629,22267966-222681... 28 8.3
05_03_0459 - 14284513-14286336 28 8.3
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 101 bits (242), Expect = 6e-22
Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Frame = -3
Query: 672 RELTASLXEQLAEEKVIRDVITDLREMAQRHHIPDHDVVTIVWQCVMSRGEWN-KKEELI 496
+E+ +L + EE I +V +++ + PD +VV ++W +M +W+ K ++
Sbjct: 319 KEIKLTLTTMINEEAEISEVTEAVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQN 378
Query: 495 AEQAAKHLRHYTPLLAAFAQSARAELALLTKVQEYCYENMSFMRAFSKLVVMLYKTSVLS 316
+ A + ++ + LL AF S R EL L+ KVQ CYE+ M+ F +++ LY VL+
Sbjct: 379 SNSALRQVKAWAGLLNAFCTSGRLELELIYKVQTQCYEDAKLMKLFPEIIRTLYDQDVLA 438
Query: 315 EEVILKWYKDTSSSKGKVMFLDQMKKFVDWLQ 220
E+ IL W++ S+ KG+ F+ ++ FV WL+
Sbjct: 439 EDTILLWFRKGSNPKGRQSFVKALEPFVKWLE 470
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Frame = -3
Query: 498 IAEQAAKHLRHYTPLLAAFAQSARAELALLTKVQEYCYENMS-FMRAFSKLVVMLYKTSV 322
+ + A+ L + LL + +S E+ +L K +E C EN F FSK++ LY V
Sbjct: 652 LLKTTAEALGKWKDLLRNYTKSVDEEMEILLKFEEMCQENTKEFSPLFSKILPYLYDKEV 711
Query: 321 LSEEVILKWYKD-TSSSKGKVMFLDQMKKFVDWLQ 220
+SE+ IL+W ++ ++ + +F+ Q + F+ WL+
Sbjct: 712 VSEDAILRWAEEKENADESDKVFVKQSEAFIQWLK 746
>09_02_0462 + 9583558-9584910
Length = 450
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = -3
Query: 483 AKHLRHYTPLLAAFAQSARAELALLTKVQEY-CYENMSFMRAFSKLVVMLYKTSVLSEEV 307
AK + LAA +++ LL + + + ++ ++ LY VL EEV
Sbjct: 353 AKEVVKKKKFLAAAVPDEASQMVLLQALVAFGAKSSPEAVKEVPIVLKALYDGDVLDEEV 412
Query: 306 ILKWYKDTSSSKGKVMFLDQMKKFVDWLQN 217
I +WY ++ + + + K FV+WLQ+
Sbjct: 413 ITQWYNESVAGGKESQVVKNAKPFVEWLQS 442
>07_03_0898 - 22403337-22404950
Length = 537
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = -3
Query: 501 LIAEQAAKHLRHYTPLLAAFAQSARAELALLTKVQEYCYENMSFMRAFSKLVVMLYKTSV 322
L+ A HL L+ + A + A + + Y + F+ F + +V V
Sbjct: 136 LLTTLADTHLGRRKMLVLSLATMSVAGVLTAFSPNVWVYAALRFVSGFGRSMVGT-SAMV 194
Query: 321 LSEEVILKWYKDTSSSKGKVMF 256
LS E++ KW+++T S G V+F
Sbjct: 195 LSTELVGKWWRNTVSVAGFVLF 216
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = -3
Query: 699 RAQASQEARRELTASLXEQLAEEKVIRDVITDLREMAQRHHIPDHDVVTIVWQCVMSRGE 520
R +EA RE+ S E EE+VIR+ ++ E + D D+ Q V+
Sbjct: 110 RRSQEEEAVREMRRSQEEDEVEERVIRE-SSEAEERKRVREKEDDDLEEFQLQLVLEMSA 168
Query: 519 WNKKEELIAEQAAKHLRHYTPLLAAFAQSARA 424
+ EE+ E A + + P ++ A++ A
Sbjct: 169 RDNPEEMEIEVAKQISLGFCPPQSSTAEALAA 200
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -3
Query: 603 LREMAQRHHIPDHDVVTIVWQCVMSRGEWNKKEELIAEQAAKHL----RHYTPLLAAFAQ 436
LREM ++ P+ TIV G W+ L+ E +AK L + Y ++ A +
Sbjct: 369 LREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCK 428
Query: 435 SARAELAL 412
R + A+
Sbjct: 429 DGRMDEAM 436
>01_05_0268 -
20251413-20251565,20252420-20252674,20252905-20253055,
20253161-20253398,20253966-20254067,20254382-20254611,
20255599-20255724,20256056-20256828
Length = 675
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 251 SRNMTLPLEELVSLYHLRITSSERTLVLYSI 343
S +MTLP + + YH+R+T E + V+ I
Sbjct: 597 SESMTLPEPKYPAFYHMRVTKEEPSTVIMEI 627
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +1
Query: 178 LIFFFSALRLLFSILEPVYKLLHLVKEHDLALGRTSVFVPLEDHLLREDARLVQHYHQLT 357
L+F + + L ++LE + KL+ + E L++ RT L+ L+ + + +
Sbjct: 110 LLFRVTMSKKLSNVLEKMNKLVDKMNELGLSVDRTESPQELKPPYLQMHSAALDESSDIV 169
Query: 358 ERAHEAHVLVAVLLD 402
R + V+V +LLD
Sbjct: 170 GRDDDKEVVVKLLLD 184
>07_03_1302 + 25618621-25620495
Length = 624
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -3
Query: 603 LREMAQRHHIPDHDVVTIVWQCVMSRGEWNKKEELIAEQAAKHLRHYTPLLAAFAQSARA 424
L++M +PD V + Q ++GE NK ELI E K++ + +++ + S A
Sbjct: 524 LKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVA 583
Query: 423 E---LALLTKVQEYCYE 382
ALL + ++ E
Sbjct: 584 SNEGKALLQSLPDFSAE 600
>03_01_0151 + 1206555-1206998,1207112-1207543
Length = 291
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = -3
Query: 684 QEARRELTASLXEQLAEEKVIRDVITDLREMAQRHHIPDHDVVTIVWQCVMSRGEWNKKE 505
+EA + + + +++ D + LR + ++IP D T+V + + ++
Sbjct: 110 EEAENQRMTHIAVERNRRRLMNDHLASLRSLIPSNYIPRGDQATVVGGAIDYVKQ--LEQ 167
Query: 504 ELIAEQAAKHLRHYTPLLAAFAQSA 430
+L+A QAA R ++AA A +A
Sbjct: 168 QLVALQAAAAERSGVGVVAAAATAA 192
>01_01_0620 -
4621291-4621379,4621722-4621803,4622238-4622282,
4623701-4623892,4625224-4625337,4625430-4625561,
4626356-4626440,4626526-4626605,4626791-4627034,
4627376-4627617,4628232-4628315,4628427-4628601,
4629351-4629464,4630025-4630236
Length = 629
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = -3
Query: 513 KKEELIAEQAAKHLRHYTPLLAAFAQSARAELALLTKVQEYCYENMSFMRAFSKLVVMLY 334
KK +++ +H+R LLA A +L + EY Y M ++ ++ +L
Sbjct: 186 KKSDMVVRGQVEHVRAERNLLAEVASHCIVKLYYSFQDSEYLYLIMEYLPG-GDIMTLLM 244
Query: 333 KTSVLSEEVILKWYKDT 283
+ L+E V + +T
Sbjct: 245 REDTLTEHVARFYIAET 261
>11_06_0309 +
22265906-22266929,22267451-22267629,22267966-22268179,
22268273-22268510,22268617-22268767,22268934-22269158
Length = 676
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 251 SRNMTLPLEELVSLYHLRITSSERTLVLYS 340
S NMTLP + +H+R+T E + L S
Sbjct: 633 SENMTLPKPNHPAYFHIRVTKEEASTALES 662
>05_03_0459 - 14284513-14286336
Length = 607
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 349 QLTERAHEAHVLVAVLLDLSEQGELCAR 432
+LTE+ H H +VA LLD +E + AR
Sbjct: 7 RLTEQIHSEHQVVAALLDKAEALVMAAR 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,602
Number of Sequences: 37544
Number of extensions: 233594
Number of successful extensions: 792
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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