Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E16
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 36 0.037
AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical ... 30 1.9
AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical ... 30 1.9
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 30 1.9
Z75531-4|CAA99805.1| 408|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 7.5
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 7.5
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 7.5
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 7.5
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 7.5
AL033510-6|CAA22062.1| 343|Caenorhabditis elegans Hypothetical ... 28 7.5
AL032623-6|CAA21513.1| 198|Caenorhabditis elegans Hypothetical ... 28 7.5
Z81476-4|CAB03923.1| 707|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 35.5 bits (78), Expect = 0.037
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Frame = -3
Query: 639 AEEKVIRDVITDLREMAQRHHIPDHDVVTIVWQCVMS---RGEWNKKEELIAEQAAKHLR 469
+E ++R++I ++ ++ +V V+ M ++NK +ELI + L
Sbjct: 503 SENSLMRNLILEINSSKLACNVTMDEVARNVFAAFMKLKHNQDFNKMKELIVKWQPLFLN 562
Query: 468 HY-TPLLAAFAQSA-----------RAELALLTKVQEYCYENMSFMRAFSKLVVMLYKTS 325
+Y T + +SA R ++ LL +++ + SF LV LY+ +
Sbjct: 563 YYKTSAESLKVKSADQKRFELDLKRRCQIQLLLAIEDKFDRDESFGVKAQALVHYLYQEA 622
Query: 324 -VLSEEVILKWYKDTSSSKGKVMFLDQMKKFVDWLQ 220
+L E+ I++W + + + K+ L MKK VDWLQ
Sbjct: 623 DILDEDSIIEW-AGSIAEESKLKGL--MKKIVDWLQ 655
>AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical
protein F53H1.4b protein.
Length = 332
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 522 EWNKKEELIAEQAAKHLRHYTPLLAAFAQSA--RAELALLTKVQEYCYENMS 373
+W +EEL+AE + ++ Y P+ +A +S A+L++ + + + +S
Sbjct: 113 QWKVREELLAENPIREIKKYAPIFSANRKSTPKTAQLSVAAEADDSDVQEVS 164
>AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical
protein F53H1.4c protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 522 EWNKKEELIAEQAAKHLRHYTPLLAAFAQSA--RAELALLTKVQEYCYENMS 373
+W +EEL+AE + ++ Y P+ +A +S A+L++ + + + +S
Sbjct: 149 QWKVREELLAENPIREIKKYAPIFSANRKSTPKTAQLSVAAEADDSDVQEVS 200
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 522 EWNKKEELIAEQAAKHLRHYTPLLAAFAQSA--RAELALLTKVQEYCYENMS 373
+W +EEL+AE + ++ Y P+ +A +S A+L++ + + + +S
Sbjct: 149 QWKVREELLAENPIREIKKYAPIFSANRKSTPKTAQLSVAAEADDSDVQEVS 200
>Z75531-4|CAA99805.1| 408|Caenorhabditis elegans Hypothetical
protein C54D10.4 protein.
Length = 408
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 169 TYLLIFFFSALRLLFSILEPVYKLLHLVKEHDLALGRTSVFV 294
T LL+F F L +LF++L+ + + + +H LG +++
Sbjct: 111 TVLLVFVFIKLCILFTVLQETIESI-MANDHPYLLGTNDIYL 151
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 700 SGTSVAGGSP*TDGVPXGAARRGE-GDP*RHHRPARDG 590
+G A GSP DG+P +GE G P + P RDG
Sbjct: 1089 AGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDG 1126
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 700 SGTSVAGGSP*TDGVPXGAARRGE-GDP*RHHRPARDG 590
+G A GSP DG+P +GE G P + P RDG
Sbjct: 1088 AGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDG 1125
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 700 SGTSVAGGSP*TDGVPXGAARRGE-GDP*RHHRPARDG 590
+G A GSP DG+P +GE G P + P RDG
Sbjct: 1088 AGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDG 1125
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 700 SGTSVAGGSP*TDGVPXGAARRGE-GDP*RHHRPARDG 590
+G A GSP DG+P +GE G P + P RDG
Sbjct: 1089 AGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDG 1126
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 700 SGTSVAGGSP*TDGVPXGAARRGE-GDP*RHHRPARDG 590
+G A GSP DG+P +GE G P + P RDG
Sbjct: 1125 AGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDG 1162
>AL033510-6|CAA22062.1| 343|Caenorhabditis elegans Hypothetical
protein Y40H7A.10 protein.
Length = 343
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 612 ITDLREMAQRHHIPDHDV 559
I+DL ++ QRHHIP DV
Sbjct: 28 ISDLDQILQRHHIPTPDV 45
>AL032623-6|CAA21513.1| 198|Caenorhabditis elegans Hypothetical
protein Y43F8B.5 protein.
Length = 198
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 633 EKVIRDVITDLREM--AQRHHIPDHDVVTIVWQCVMSRGEWNKKEELIAEQAAK 478
+K I I DLR + ++R H+ DV T+ M + WN + A++ AK
Sbjct: 23 QKEIVTYINDLRSLVASRRFHLDSRDVETLPPASDMLKMTWNSTLAVAAQKLAK 76
>Z81476-4|CAB03923.1| 707|Caenorhabditis elegans Hypothetical
protein C25F9.5 protein.
Length = 707
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 298 LEDHLLREDARLVQHYHQLTERAHEAHVLVAVLLDLSEQ 414
L + LL+ED + +Y T++++ +HV+V D E+
Sbjct: 293 LLESLLKEDYLAINYYGNETKKSNNSHVVVITTYDRFEK 331
>AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical
protein F14H12.3 protein.
Length = 257
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 264 PCPWKN*CLCTT*GSPPP 317
PCP + C CTT PPP
Sbjct: 182 PCPQQAACPCTTCNQPPP 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,543
Number of Sequences: 27780
Number of extensions: 173870
Number of successful extensions: 607
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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