Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E15
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   1.2  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   6.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.7  

>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/75 (24%), Positives = 40/75 (53%)
 Frame = -3

Query: 462 NQLEVEDHVITSGVLKLKSEPFVDVNKVEIYFVKLLPVINDLITKNMCKGDNNIPDLLTQ 283
           N L V +HV  S + K  +    D+  V ++ + LLPV+  +  ++M + D+  P+ +++
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIVKFDLYNVLLFLLFLLPVL-FVFARSMIEFDDTYPESVSK 60

Query: 282 QLTLNEKLKLLGANI 238
           +   ++K  L   ++
Sbjct: 61  RARPSQKPPLRSTHL 75


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 384 KVEIYFVKLLPVINDLITKNMCKGDNNIPDLLTQQLTLNEKL 259
           KV+ Y  + +P + DL+ KN+   D  I +++  +    EKL
Sbjct: 4   KVQYYMEQSVPELEDLLEKNIFNRD-EINNIIKTRRVFEEKL 44


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 493  ICDQIDTTK*ESIRSRRSCHHKWSIKIEERAF 398
            IC +  T K  S++ R SC  +W +++    F
Sbjct: 2137 ICSKCKTVKQWSLKERCSCSGEWVLQLSPTKF 2168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,679
Number of Sequences: 5004
Number of extensions: 52850
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)