Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E15
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890...    31   1.3  
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989...    29   3.0  
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595...    28   6.9  

>04_04_0308 +
           24286923-24286927,24288430-24288907,24288980-24289099,
           24289182-24289235,24289467-24289579,24289799-24290011,
           24290123-24290201,24290323-24290376,24290448-24290522,
           24291029-24291193,24291843-24291941,24292186-24292241,
           24292331-24292433,24293289-24293417,24293657-24293835,
           24293953-24293977,24294060-24294175,24294252-24294342
          Length = 717

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 498 NLFVTKSIPPSKN-QLEVEDHVITSGVLKLKSEPFVDVNKVEIYFVKLLPVINDLITKNM 322
           NL  T  I  +    +   D+ +   +L LKS PFVD+  + +Y         D ++K +
Sbjct: 307 NLIQTSQIRENLQLSISTSDNRLKDLMLLLKSPPFVDMRSIIVYC--KFQAETDFVSKYL 364

Query: 321 CKGDNNI 301
           C  DNNI
Sbjct: 365 C--DNNI 369


>05_07_0341 -
           29398221-29398345,29398757-29398811,29398904-29398981,
           29399063-29399154,29399237-29399260,29399353-29399471,
           29399839-29399908,29399985-29400051,29400145-29400219,
           29400313-29400351,29400735-29400827,29401611-29401634
          Length = 286

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 474 PPSKNQLEVEDHVITSGVLKLKSEPFVDVNKVEIYFVKLLPVINDLITKNMCKGDNN 304
           PP + Q+E   HV+ +G + L ++  VD +K +      L  + D + K    GD +
Sbjct: 216 PPLRQQVEAFTHVLRTGQIDL-AQFGVDPSKYKFTVASFLEALEDSVAKASGAGDKD 271


>12_01_1023 +
           10458092-10458397,10459126-10459254,10459335-10459553,
           10459649-10459987,10460095-10460199,10460697-10460807,
           10461438-10461688,10462023-10462146,10462440-10462716,
           10463212-10463357,10463449-10463598,10463678-10463910,
           10464246-10464375,10464406-10464510,10464636-10464914
          Length = 967

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 726 VEQMFWSIQTILCTDTVEGDPLKNMVYYLIGHNEINDSKLDTIVKETMDIL 574
           +E +FWS   +L  D  +   + NM+  L     ++ S L  I+KE ++IL
Sbjct: 346 IETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEIL 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355,373
Number of Sequences: 37544
Number of extensions: 258704
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)