Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E11
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    54   2e-08
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.4  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    26   5.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   7.2  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 47/174 (27%), Positives = 75/174 (43%)
 Frame = -1

Query: 795 DPRFLPSLELLADACRDKVDVDIITGDILXTDLSQFIPSDAKVHWLDPPPPVHLIGNLPF 616
           DPR    +         +  + ++ GD++ TDL  F   D              + N P+
Sbjct: 81  DPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYF---DV------------CVSNTPY 125

Query: 615 SVSTILIIRWLEMISKHEGPWLFGRTRMTLTFQKEVAERMAARILDKQRCRLSVMCQSWC 436
            +S+ L+ + L+   +   P         L FQ+E A R+ AR  D   CRLS   Q W 
Sbjct: 126 QISSPLVFKLLQ---QRPAP-----RAAILMFQREFALRLVARPGDPLYCRLSANVQMWA 177

Query: 435 TVKYNFDIPGTAFLPKPDVDVGVVTLTPLKHPIIKLPFKLAEKVVRQIFSMRQK 274
            VK+   +    F P P V+  VV + P K+P   L F+  + ++R +F  + K
Sbjct: 178 HVKHIMKVGKNNFRPPPLVESSVVRIEP-KNPPPPLAFEEWDGLLRIVFLRKNK 230


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 375 VGVVTLTPLKHPIIKLPFKLAEKVV 301
           V +V LTPL HP++ +P+  A KVV
Sbjct: 95  VYLVILTPLPHPML-IPYLFAPKVV 118


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 351 LKHPIIKLPFKLAEKVVRQIFSMRQKY 271
           L+HP++K  FK    + R+I +M ++Y
Sbjct: 442 LQHPLVKEQFKRFAHMQREIVAMSEQY 468


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = -1

Query: 783 LPSLELLADACRDKVDVDIITGDILXTDL---SQFI--PSDAKV--HWLDPPPPVHLIGN 625
           LP L  L      K+ VD I  + +  D    ++F+  P +A V   + +     H I N
Sbjct: 123 LPFLRTLPPNTLGKIYVDWIDKEHVGPDTRSPTRFVDDPEEAYVMQRYRESHDFYHAICN 182

Query: 624 LPFSVSTILIIRWLEMIS 571
           +P ++   L I+WLE ++
Sbjct: 183 MPTNIEGELAIKWLEFVN 200


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 490 GSHSLCNFFLKSKSHSCSPKQ 552
           GSH   N++  S S SC P+Q
Sbjct: 142 GSHGYFNYYGASSSRSCIPQQ 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,905
Number of Sequences: 5004
Number of extensions: 76976
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)