Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E09
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   2.2  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   2.2  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   2.9  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    24   6.7  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   6.7  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   8.8  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    23   8.8  

>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 190 CLCRTLQLPATPFPTCHPYLYLP 122
           C  R +Q    PFP  H Y ++P
Sbjct: 11  CSHRVIQAKHPPFPLFHSYFHIP 33


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 322 EFGRPMSANRVQSNLASDKLSKCL 251
           E G+P+S + V++NL  DKL K +
Sbjct: 517 EPGKPLSPSLVEANLNPDKLIKTI 540


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 172 QLPATPFPTCHPYLYLPSTALHSPASTHKSHMQMIIS 62
           Q P +P P+  P +  PSTA       H S     +S
Sbjct: 97  QSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVS 133


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 152 SYVSSLSVPTVYSSAFTGFYPQIAYANDYIFRK*NVKVNTYMLE 21
           ++ +++S   +Y  A  GF+P   ++ D +FR   V   T++ E
Sbjct: 327 THTTAVSANMLYKLAQNGFHPAKYFSIDRVFRNETVDA-THLAE 369


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 153 FLRVILICTYRLQLCIHRLLPT 88
           FL VI I  Y+L+  +HRL  T
Sbjct: 347 FLNVIGIAAYKLEDPVHRLFVT 368


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 187 LCRTLQLPATPFPTCHPYLYLPSTALHSPASTHKS 83
           +CRTL++    FP+    L L    LH  +++H S
Sbjct: 3   VCRTLKISIKSFPSSLSLLSLYKRRLHK-STSHSS 36


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 164 GYPLSYVSSLSVPTVYSSAFTGFYPQIAYAND 69
           G   +YVS+    TV    F+GFY  + Y N+
Sbjct: 17  GINSAYVSNEEGETV-DFTFSGFYANLTYPNE 47


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 AATAGYPLSYVSSLSVPTVYSSA 108
           AATA +  + VSS  + T Y+SA
Sbjct: 170 AATASFSYTNVSSSVIATAYTSA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,849
Number of Sequences: 5004
Number of extensions: 25100
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)