Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E08
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical ...    27   2.8  
U64599-7|AAL11462.1|  819|Caenorhabditis elegans Regulator of g ...    26   6.4  
AY569308-1|AAS75452.1|  819|Caenorhabditis elegans RGS-7A protein.     26   6.4  

>Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical
           protein C15C8.5 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 142 HGGY*AGCINVVQARVWEKLRSWFRRCLRV--WSGQRH 249
           HG    GCI++ +   W  L+S  RR L V  W  Q H
Sbjct: 253 HGRVSKGCISLNERNSWSHLKSGHRRILGVEQWLCQAH 290


>AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical
           protein H23L24.2 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 328 FDDSVLVLTRNKQHVQQIRRFLRSIGR 248
           FD+ V + T  KQH+  + R L+S+ R
Sbjct: 449 FDNEVYIRTEIKQHISDLCRLLKSMPR 475


>U64599-7|AAL11462.1|  819|Caenorhabditis elegans Regulator of g
           protein signalingprotein 7, isoform a protein.
          Length = 819

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 110 TAAAAEAYGDTTEGTKPGV*T*SRLVYGR 196
           + + +E+Y DTTE T P   T   +++GR
Sbjct: 25  SGSESESYQDTTESTGPSEATTDEMLWGR 53


>AY569308-1|AAS75452.1|  819|Caenorhabditis elegans RGS-7A protein.
          Length = 819

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 110 TAAAAEAYGDTTEGTKPGV*T*SRLVYGR 196
           + + +E+Y DTTE T P   T   +++GR
Sbjct: 25  SGSESESYQDTTESTGPSEATTDEMLWGR 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,796,518
Number of Sequences: 27780
Number of extensions: 99299
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)