Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E04
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   0.96 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   3.9  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   3.9  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.1  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   6.7  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    24   8.9  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    24   8.9  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   8.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    24   8.9  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 142 PYSLFYYKTVASRYPPAQSSASSNKKLAFFSI-ISSLHFLHAATLLQPLVEYSASQELHW 318
           P SLF      +  P ++SS+  +KK +  S  + S   L   T   PL+   + +  HW
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 319 SMKFTKVTSA 348
           +++   + SA
Sbjct: 102 TIRHESMPSA 111


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 106 PFYVNF*IKKAYPYSLFYYKTVASRYP 186
           P Y+N  +K+ +P +  YYK +A+  P
Sbjct: 365 PDYLNGLMKRLFPLAELYYKRMATDVP 391


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 173 HHGILQPSHQHHQTKNLHSSP 235
           H G+L P HQH    ++ +SP
Sbjct: 16  HPGLLTPDHQHAAILSVQNSP 36


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 392 LWIFYSFLPP*ILRIAEVTLVN 327
           L +FY+F+PP       VTL+N
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLIN 298


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 187 PAQSSASSNKKLAFFSIISSLHFLHAATLLQPLVEYSASQELHW 318
           P + S+++  K++  SI    H LHA TL    VEY+  + L W
Sbjct: 224 PFKYSSTTRHKVSTESIF---HVLHAFTLFDTTVEYNI-EPLLW 263


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 142 PYSLFYYKTVASRYPPAQSSASSNKKLAFFSIISSLHFLHAATLLQPLV 288
           PY +  Y  V  R PPA +  S   K     +   + ++ +A +L+ LV
Sbjct: 25  PYEIKVYDRVDGRAPPAYTKLSPLGKSPIV-VDDGVTYIESAAILEHLV 72


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 344 EVTLVNFMDQCSS*EAEYSTNGCNRVAAC 258
           EV   N MD+C +  +E    GC+ +  C
Sbjct: 259 EVICENLMDRCIASNSESCGIGCDNMTIC 287


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 225 ILLHYQQSSFFACSYPVTTISRIFCLSGTAL 317
           +L +  Q+  F CS  +T     FCLSG+ +
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQI 119


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 220  VFCLMMLMTGLEDTVMLQ-FCNKTMN-MDMLFLFRN*HKTGHLSRLTNKIM 74
            V  L+ +   L D + L+ F  +  N MD+  +  N  + G LSR+ NK M
Sbjct: 1209 VIKLVGMANNLNDNLELEEFRTRITNSMDIPLILFNMGRFGQLSRILNKFM 1259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,728
Number of Sequences: 5004
Number of extensions: 33145
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)