Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_E03
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 84 3e-17
05_03_0661 - 16726958-16726966,16727133-16727234 57 6e-09
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510... 30 0.58
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 28 2.3
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 28 3.1
06_03_0336 + 19671500-19672150,19672681-19673301 27 4.1
08_02_0588 + 19036509-19039235 27 7.1
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 27 7.1
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560... 27 7.1
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 26 9.4
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104... 26 9.4
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 84.2 bits (199), Expect = 3e-17
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = -3
Query: 228 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 73
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST GMDPKFLRNQR+ +K N K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 56.8 bits (131), Expect = 6e-09
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = -3
Query: 228 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 121
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST G +
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36
>01_02_0050 +
10649275-10649655,10649807-10649921,10651003-10651009,
10651035-10651216,10651318-10651530,10651621-10651688,
10651772-10651846,10651961-10652068,10652413-10652530,
10652652-10652793,10653084-10653140,10653281-10653701,
10654064-10654528
Length = 783
Score = 30.3 bits (65), Expect = 0.58
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 281 CIYSNDFIFLYRIENASKWQSQRI 210
CIY+ D + LY ++NA W S I
Sbjct: 128 CIYACDIVLLYLLQNAFNWDSSLI 151
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 165 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 82
+KP K R L + +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -1
Query: 290 RCVCIYSNDFIFLYRIENASKWQSQRIIQIITKTAKL-TEMVSKSQGRPGTNPPLAW 123
RC + + LY + A W + Q +T + ++ GR GTNPP W
Sbjct: 4 RCSGSHGRQLLLLYWLVIACSWVAAAQAQQAPRTDPVEVAALNAILGRWGTNPPKTW 60
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 130 WHGSKIFKESKVLQEG*PEASQATREGG 47
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 58 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 150
ELLGW QV A ++P + + A F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -3
Query: 219 SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLAR 52
+K NH + GI PR + LG P R + F + +L+ +LAR
Sbjct: 41 TKEKYNHKVCKPRVCPGISSPRWPMNCPALGRQPAHYRGRVFVRSFDLESTSKLAR 96
>02_05_0773 +
31654985-31655365,31655486-31655610,31655712-31656026,
31656145-31656314,31656408-31656751
Length = 444
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 189 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 91
++AHRNG+K T H++ G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 278 IYSNDFIFLYRIENASKWQSQRIIQIITKTAKLTEMVSKSQG 153
+ D + RIEN +RI++ TK +KL ++ K++G
Sbjct: 214 VEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKNEG 255
>02_04_0013 -
18910009-18910056,18910154-18910282,18910373-18910420,
18910532-18910594,18910675-18910713,18912107-18912180,
18913014-18913072,18913265-18913324,18913466-18913590,
18914054-18914112,18914356-18914419,18914516-18914569,
18914727-18914765,18916135-18916275
Length = 333
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 112 FKESKVLQEG*PEASQATREGGLREKLPEKQR 17
F + KV +EG PE + + L+EK+ E++R
Sbjct: 240 FADEKVKEEGLPEDEREKMKEFLKEKVRERKR 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,624,217
Number of Sequences: 37544
Number of extensions: 146702
Number of successful extensions: 403
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -