Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_E03
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    75   1e-14
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    57   5e-09
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    44   3e-05
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   4.8  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   4.8  
Z73908-5|CAA98129.2|  325|Caenorhabditis elegans Hypothetical pr...    26   8.4  
U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical pr...    26   8.4  
U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical pr...    26   8.4  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    26   8.4  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 33/50 (66%), Positives = 39/50 (78%)
 Frame = -3

Query: 228 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 79
           MAKSKNHTNHNQN+KAHRNGI KP+K    S  G+D KF++N RF +K N
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = -3

Query: 222 KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 79
           K +NHTNHN+N KAHRNGI KP+K    S  G   +F+++ RF +K N
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = -3

Query: 222 KSKNHTNHNQNRKAHRNGIKKPR 154
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 240 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHES--TLGMDPKFLRNQR 97
           K+ K A + NH N ++N     NG + P+KTR  S  T    PK  R+ R
Sbjct: 376 KKSKKAAAANHKNASRN-----NGNETPKKTRRSSSTTPTRTPKQRRSSR 420


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 189 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCK 88
           +K HR+ +KK R+ RH   +   P +    R C+
Sbjct: 266 QKLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 168  YHFCELCGFGYDLYDSL 218
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 168  YHFCELCGFGYDLYDSL 218
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>Z73908-5|CAA98129.2|  325|Caenorhabditis elegans Hypothetical
           protein F53B2.4 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 53  LASCLAGFRLPFLQNL*FLKNFGSMPRVDSCLVFLG 160
           L + L+ F +PF+    F+  F  +P + SC   LG
Sbjct: 148 LCARLSNFAIPFIYLYPFIFTFSLIPALGSCRQLLG 183


>U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK682.7 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -3

Query: 240 KRIKMAKSKNH-TNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAK 64
           KR  ++KS+   T+    R    +G++ P   R   T  + PK L N+ +       P+K
Sbjct: 44  KRKALSKSQRELTDFVNGRNGDPHGLRLPLPIRSSLTDLVKPKLLENRNYQPPRRKTPSK 103

Query: 63  QLARAX*EKSYPRSKGQEMN 4
                  E S    K + +N
Sbjct: 104 DHHSKAEENSKKAKKLERIN 123


>U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical
           protein K01A12.3 protein.
          Length = 496

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 240 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRN 103
           KR      + H  HN +++++  G+K  R +        D  F+RN
Sbjct: 363 KRRSSHPFRMHGRHNVSKRSNAAGMKSTRISARSGRTNRDGNFVRN 408


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 353 NSLNINKII*QNKYFK-IE*AIRCV-CIYSNDFIFLYRIENASKWQSQRIIQIITKTAKL 180
           NS+  NK     K  K +   +R + C++ +  +FLY  EN    Q   +++I+TK    
Sbjct: 134 NSIPFNKHKISGKLLKFVYYTVRVIICVFFSSILFLYLPEN----QEAALLEILTKIPCP 189

Query: 179 TEMVSKS 159
           TE   K+
Sbjct: 190 TEEYFKN 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,664,651
Number of Sequences: 27780
Number of extensions: 136522
Number of successful extensions: 412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)