Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D21
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    43   5e-05
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.6  
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    26   5.9  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   5.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.9  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 3/198 (1%)
 Frame = -2

Query: 854 IRLSIFYERXSQNFNRIRFGQNFXGLVANXNDLLIMKXXXKIRXXRXCDPEEEGDMTGVA 675
           IRL + Y    Q  N  RF   F G VAN  D++      K    +  D      +  + 
Sbjct: 374 IRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKKKYTRSKRNDGLYTSAVEDIK 433

Query: 674 AEAADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIA 495
             +  VESL+  Y     K  RL  L    + +AV +F  K + D ++   +    + I 
Sbjct: 434 INSLRVESLVNEYL----KTNRLECLPEDSLGEAVVNFVEKDDRDAIKECVETQLNKQIN 489

Query: 494 ALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLI--VPVVK-LP 324
            L++    TE+ + +++     +L +    K     +     S  +  +    PV+K   
Sbjct: 490 LLVKKRV-TEENLEQEISSIINDLPKISTTKRKDYEELPEEVSETSINIAEHTPVLKHTS 548

Query: 323 NTVGKRTIVVLSSDEEEL 270
           + +   + +  SS E E+
Sbjct: 549 SLLDHHSPLATSSSEHEM 566


>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 218

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 710 DPEEEGDMTGVAAEAADVESLLRAYYEAQP-KDKR 609
           + EEE DMT +   A  +E +L+ + E QP +DKR
Sbjct: 182 ETEEEADMTSIKQHA--IEVVLQDFQEEQPLEDKR 214


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 500 IAALLESTAETEKEIAEQLEVCKRELD 420
           +  L +  ++ EKE  + LE+CKR LD
Sbjct: 77  VPRLSQLVSKWEKEGVDSLEICKRVLD 103


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 601 YYQSES*LMQFGILPLSTMKMSCGGHLMLINVVALLHYWNL 479
           YY +E+  +  G +PLS   +S       INV + +  WNL
Sbjct: 183 YYANENSSVMRGKIPLSIAVISVAAETHEINVDSGVELWNL 223


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 521  DAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEA 414
            D +KR  +  L E    + KE+A+QLE   RE D A
Sbjct: 1014 DLNKR--VEVLKEEKESSSKELAKQLEDAVREKDSA 1047


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,435
Number of Sequences: 5004
Number of extensions: 46967
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)