Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D20
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -3

Query: 430 EMRTLCR---QDKPTRRRSYEDGGLNEPKKNQKNTNNISKK 317
           E  T CR   ++K   +R+  DG + EP ++Q++TN+ +++
Sbjct: 46  EAVTACRKYVEEKSRPKRTVLDGDMGEPTEDQEDTNDHARR 86


>Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical
           protein C09G1.3 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 219 RRSAMKNNKQQCTQHANKM*HSLRAGHSN*TEALGNVKDISVMSCFIIKW 70
           RR+   N +Q+  +H +     +   +    E+L  V D   MSC +I W
Sbjct: 8   RRTKRNNEEQKTEEHQDVQETRILTYNQKNAESLQQVSDEVFMSCKVIDW 57


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 349 FFLVRLIRHPRMISFELAYLVCI 417
           F L  LIR  R++ F LAY VC+
Sbjct: 713 FHLFSLIRDQRVVDFLLAYAVCL 735


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 328 YCLYFFDFFLVRL 366
           +CL+FFDF +VRL
Sbjct: 81  FCLFFFDFLMVRL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,692,222
Number of Sequences: 27780
Number of extensions: 266257
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)