Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D19
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   155   7e-39
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    30   0.33 
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.1  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   3.1  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   4.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   5.4  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   9.5  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    25   9.5  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  155 bits (375), Expect = 7e-39
 Identities = 79/148 (53%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
 Frame = -1

Query: 574 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 401
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 400 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 221
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 220 YDAILEDLVFPAEIVGKR-XQGQVGRLT 140
           ++AILED+VFP EI+GKR  Q   GR T
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKT 151



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -2

Query: 150 DGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTLRVP 25
           DG + IKV LD     T+++K+ +F SVY KLTG+ VT   P
Sbjct: 147 DGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = -1

Query: 628 GNLNELLFPSRKVVKMSTKIIKASGAEADSFETSISQALVEL-ETNSDLKAQLREL-YIT 455
           GN      P R ++K ST +         SFE + S+    L E  S   + +  L ++ 
Sbjct: 53  GNRPSFGLPKRGILKTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQHVE 112

Query: 454 KAKEIELHNKKSIIIYVPMPKL 389
           K+  IE ++K S  + +  P L
Sbjct: 113 KSARIETYSKLSSFLKIYTPSL 134


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +3

Query: 282 LGLGRILRSPTKTTCLPLNFFSSSRTS 362
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 309  ETVRSCLSPATKPVLLTNKRGHAQ 238
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -1

Query: 412 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 320
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 254 KEATLKDIDLCVRCYPRGLGLPC 186
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +2

Query: 8    FTNKVRGTRKVTSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLXALAYDLS 187
            F +K+R   K   R +  L    K ++   +  CW+L    +   EP+N        D++
Sbjct: 817  FESKLRQENKPKIRAMKIL----KSASNAVVTACWYLFYVAVQQIEPTNSQYFLRTLDIT 872

Query: 188  REDQVLE 208
              ++ L+
Sbjct: 873  LNNEKLK 879


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 292 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 167
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
 Frame = -1

Query: 604 PSRKVVKMSTKIIKASGAEADSFETSIS-------QALVELETNSDLKAQLRELYITKAK 446
           PS +++K S++ ++ +G    + ET  +       +AL ELE N   KA+ +E    + K
Sbjct: 34  PSPELLKQSSRRLEQAGYSVKNAETITNLMRTITGEALTELEKNIGFKAK-QESVSFQQK 92

Query: 445 EIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEK 341
              L  +K  +  +   +    +K   +L+ E+EK
Sbjct: 93  RTFLQIRK-YLETIEENEFDKVRKSSDKLINEIEK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,376
Number of Sequences: 5004
Number of extensions: 49825
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)