Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_D19
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 138 5e-33
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 123 1e-28
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 75 5e-14
03_02_0488 - 8824980-8825267,8825364-8827775 30 1.8
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.4
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.2
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 4.2
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 28 7.4
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 7.4
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 7.4
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 28 7.4
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 7.4
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 138 bits (333), Expect = 5e-33
Identities = 72/138 (52%), Positives = 100/138 (72%), Gaps = 2/138 (1%)
Frame = -1
Query: 574 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 401
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 400 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 221
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 220 YDAILEDLVFPAEIVGKR 167
+D ILED+V+PAEIVGKR
Sbjct: 123 HDGILEDVVYPAEIVGKR 140
Score = 49.2 bits (112), Expect = 3e-06
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = -2
Query: 156 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTLRVPRT 19
+LDG+++IK+ LD ++ E+K++TF +VY++L G++V P T
Sbjct: 144 RLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYPMT 189
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 123 bits (296), Expect = 1e-28
Identities = 66/120 (55%), Positives = 88/120 (73%), Gaps = 2/120 (1%)
Frame = -1
Query: 520 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 347
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 346 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 167
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/45 (42%), Positives = 31/45 (68%)
Frame = -2
Query: 153 LDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTLRVPRT 19
LDG +++K+ LD ++ E+K+DTF SVY++L G++V P T
Sbjct: 158 LDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMT 202
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 74.9 bits (176), Expect = 5e-14
Identities = 42/98 (42%), Positives = 63/98 (64%)
Frame = -1
Query: 466 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 287
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 286 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 173
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = -1
Query: 625 NLNELLFPSRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAK 446
N+ + F S ++SG + FET +S A++E+E N+ L + +K
Sbjct: 285 NIGQSFFTSHNNDSACGDFQQSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSK 338
Query: 445 EIELHNKKSIIIY-VPMPKLKAFQKI 371
+I H++ I Y P+P + + +++
Sbjct: 339 DIGQHHEFPRIPYSCPLPIMDSSEEL 364
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 252 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 368
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = -1
Query: 514 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 380
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -1
Query: 514 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 380
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -1
Query: 247 PRSRTLTSVYDAILEDLVFPAEIVGK 170
P +RTLT+ +D IL+D + A+I GK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGK 110
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = -1
Query: 514 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 380
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = -1
Query: 634 TIGNLNELLFPSRKVVKMS-TKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYI 458
T+GN L +V ++ ++ I SGA + + S L +L + Q ++YI
Sbjct: 300 TVGNQELLKCGRLNLVDLAGSENIARSGAREANQKVCKSVILKDLYQEMERMKQGSQVYI 359
Query: 457 TKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRE 350
TK +++ +K+ IY+P + A ++ + + +R+
Sbjct: 360 TKLSDVKAAREKN-GIYIPQERF-ALEEAEKKTMRD 393
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 120 DKNQQTTIEHKVDTFQSVYKKLTGREVTLRVPR 22
DK Q T HK+++F + KKL + LR R
Sbjct: 362 DKYQYTHFAHKINSFDTAPKKLLASDSRLRPDR 394
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -1
Query: 589 VKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 410
V++ + ++ S E +SF S+ + + + D L + Y KEI N+ ++ +
Sbjct: 528 VRVQEQELEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEI---NRLTLDM 584
Query: 409 YVPMPKLKAFQKIQIRL---VRELEKKFSGKHV 320
+ +L F +++ L V EL+K+ + V
Sbjct: 585 EMANDRLNDFNLVRLNLENTVCELKKEVTSLEV 617
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,663
Number of Sequences: 37544
Number of extensions: 329108
Number of successful extensions: 878
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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