Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D16
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    43   4e-05
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    27   3.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   6.1  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = -3

Query: 678 PEGMPSISDMVEAAIKVLRKNKN-----GYFLMVEGGNVDMAHHRGWAKRAVDESXXXXX 514
           PE  P +S+MVE A+ VL    N     G+FL++EG  +DMA H       V E      
Sbjct: 272 PEVQPKLSEMVETALDVLLNATNEDTSKGFFLLIEGSRIDMASHNNDPIAHVYEVMEYNR 331

Query: 513 XXXXXXAHTDPRDTLLVVTSDH 448
                 A  +     L+ TSDH
Sbjct: 332 AFEIASAFVEKNGGSLISTSDH 353


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -1

Query: 398 FGIAQTSKYDNVNYTTLS-YGTGGPGSMKYSVKTEHNRTVAAREDPGVNTDSFDYQQIAA 222
           +GIA  S YD +++T LS + T G   ++Y               P   TD  +Y+ +  
Sbjct: 250 YGIAFYSSYDLIHWTELSVFSTSGYLGLQYECP-------GMARVPVEGTD--EYKWVLF 300

Query: 221 ITLDENSHGGGDVVVYARG 165
           I+++  +  GG VV Y  G
Sbjct: 301 ISINPGAPLGGSVVQYFVG 319


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 341 GTGGPGSMKYSVKTEHNRTVAAREDPG-VNTDS 246
           GTG   S + S K   + TV++  DPG +N DS
Sbjct: 197 GTGDLPSSEISTKAPASTTVSSSVDPGTINEDS 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,472
Number of Sequences: 5004
Number of extensions: 44459
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)