Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_D16
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0277 + 19684956-19686137 30 2.1
05_05_0073 - 22186478-22186538,22187170-22187351 29 2.7
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 29 2.7
04_03_0331 + 14510848-14511124,14511139-14511528,14511708-145119... 29 3.6
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 29 4.8
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 29 4.8
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499... 28 6.3
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 28 6.3
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 28 8.4
>05_04_0277 + 19684956-19686137
Length = 393
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 370 SYFEVWAMPNISVPLXGVAVDGERVRVVA-GDDEQRVPGVGVRSREPHGALEGRGLVDGA 546
S+FE W GV DG +V +A GD PG+ R + G L L + +
Sbjct: 44 SFFEAWDFTADPCGFPGVFCDGNKVSALALGDPRAGSPGLSGRLDQALGRLS--ALTELS 101
Query: 547 LGPAPVVGHV 576
L P V G +
Sbjct: 102 LVPGRVEGEL 111
>05_05_0073 - 22186478-22186538,22187170-22187351
Length = 80
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 475 VPGVGVRSREPHGALEGRGLVDGALGPAPVVGHVH 579
V GVG+R +E A++GR + G LG + V H
Sbjct: 27 VRGVGMRRKEDDEAIDGRRCIAGRLGGSEPVNVTH 61
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = -1
Query: 386 QTSKYDNVNYTTLSYGTGGPGS---MKYSVKTEHNRTVAAREDPG----VNTDSFDYQQI 228
+ KY + T+ G GG G+ M S T+ ++ R D G V S+
Sbjct: 71 EAHKYFDHAVVTVRAGDGGHGAVLAMPASPSTDAPKSPRRRSDKGKRSGVKKVSYKRNYD 130
Query: 227 AAITLDENSHGGGDVVVYA 171
++ L HGG DVVVYA
Sbjct: 131 GSVALPMGGHGG-DVVVYA 148
>04_03_0331 +
14510848-14511124,14511139-14511528,14511708-14511997,
14512080-14512154,14512194-14512409,14512727-14512795,
14512941-14513891
Length = 755
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 442 VRVVAGDDEQRVPGVGVRSREPHG--ALEGRGLVDGALGPAP 561
+R GD Q PGVGV R H L GR GA G P
Sbjct: 126 LRSGGGDGSQCPPGVGVPPRTVHRTLGLRGRPSAQGASGSGP 167
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 675 EGMPSISDMVEAAIKVLRKNKNGYFLMVEGGNVDMAHHR 559
EG ISD VE + +K+G+ L +G N + HHR
Sbjct: 232 EGTNRISDNVETKDMLPYVDKDGHALSRDGRNKEARHHR 270
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -1
Query: 227 AAITLDENSHGGGDVVVYARGPHAHLFHNVHEQHYVYHAISYAAKMGAYSGTSAIYTNIS 48
AA + GGG + RG HAHL + +H +H+ H + + A SG T S
Sbjct: 8 AAAGMGSGGGGGGSGEHHMRG-HAHLTNCIHLRHHHAHGLGAGS---ASSGRRRSPTGSS 63
Query: 47 LLAIAA 30
A AA
Sbjct: 64 ASASAA 69
>03_02_0984 + 12947444-12947530,12949071-12949127,12949833-12949904,
12950050-12950112,12950955-12951131,12951503-12951628,
12951711-12951777,12952019-12952215,12952617-12952691,
12954524-12954554,12954714-12954802,12955120-12955188,
12955306-12955425,12955963-12956081,12956303-12956441,
12956538-12957038,12957293-12957592,12957694-12957875,
12958277-12958388,12958953-12959072
Length = 900
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 269 DPGVNTDSFDYQQIAAITLDENSHGGGDVVVYARGPHAHLFHNVHE-QHYVYHAISYAAK 93
DP VN+ + D + A T++ ++ GGD G + + HNV E + + + Y
Sbjct: 797 DPNVNSSARDPE---ATTMEIDNENGGDNDSQLNGQNKKISHNVGELEQWCLCTLGYLKS 853
Query: 92 MGAYSGTSAIYTNISLL 42
T I+++I++L
Sbjct: 854 FSRQYATE-IWSHIAML 869
>01_05_0195 -
19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 508 HGALEGR-GLVDGALGPAPVVGHVHIAAFY----HKKVSVFIFP*HFYGGFDHIGYRRHT 672
HG + R GLVD +L P +V H H+A H KV+ P H Y R T
Sbjct: 91 HGGMVDRVGLVDVSLSPHNIVVHSHMAVLVRTLKHSKVAYPQCPNEM-----HWMYNRKT 145
Query: 673 FRTFVSF 693
+ F+S+
Sbjct: 146 WTCFLSY 152
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 395 GIAQTSKYDNVNYTTLSYGTGGPGSMKYSVKTEHNRTVAAREDPGVNTDS 246
G +Q + YD Y T YG+ + S + + VA + PG T +
Sbjct: 526 GYSQQTGYDQQGYGTSGYGSAANSTQDGSAPSYGAQGVAGQASPGQQTST 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,224,867
Number of Sequences: 37544
Number of extensions: 364328
Number of successful extensions: 1162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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