Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_D16
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical pr...    31   0.81 
Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   5.7  
U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical p...    27   9.9  
AY204187-1|AAO39191.1|  156|Caenorhabditis elegans nuclear recep...    27   9.9  
AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormo...    27   9.9  

>U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical
           protein C02G6.3 protein.
          Length = 142

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 308 VKTEHNRTVAAREDPGVNTDSFDYQQIAAITLDENSHGGGDV-VVYARGPHAHLFHNVHE 132
           +   H  T +  E+P  NT  F+ + I  ITL       G + +++      H+ H  HE
Sbjct: 58  ITNSHMNTSSLSEEPISNTSQFN-ETILLITLTLMIFFFGCISILFIFRKIQHIRHKEHE 116

Query: 131 QHYVYHA 111
             +VYHA
Sbjct: 117 PDFVYHA 123


>Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical
           protein F53B6.9 protein.
          Length = 75

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 185 VVVYARGPHAHLFHNVHEQHYVYHAISYAAKMGAY 81
           +V YA   H+H + + HE H+ +H   Y    G Y
Sbjct: 18  IVTYAH--HSHSYSHSHEHHHHHHGGYYGGGYGGY 50


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 377 KYDNVNYTTLSYGTGGPGSMKYSVKTEHNRT 285
           +Y N N+ +  +G GGPGS+    +TE + T
Sbjct: 254 QYSNHNHYSNYHGGGGPGSISARSRTESHST 284


>U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical
           protein C06A5.8a protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 290 CCVRFSRSTSWSPGLRCRKTASCSSRCRILKFGLCQIYQCP 412
           CC  ++ +T  + GL C  T        + K+G     +CP
Sbjct: 41  CCTNYNETTKLARGLHCGHTFCTECIKTMQKYGNSAYLECP 81


>AY204187-1|AAO39191.1|  156|Caenorhabditis elegans nuclear receptor
           NHR-103 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 284 RSCCVRFSRSTSWSPGLRCRKTASC-SSRCRILKFGLCQIYQC 409
           RSC   F RS +WS     RK   C    C+I + G     QC
Sbjct: 29  RSCAAFFRRSATWS-----RKKVQCVKGTCKIFEDGKFNCKQC 66


>AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 103 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 284 RSCCVRFSRSTSWSPGLRCRKTASC-SSRCRILKFGLCQIYQC 409
           RSC   F RS +WS     RK   C    C+I + G     QC
Sbjct: 29  RSCAAFFRRSATWS-----RKKVQCVKGTCKIFEDGKFNCKQC 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,151
Number of Sequences: 27780
Number of extensions: 273977
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)